RNA id: LOC111190150


Basic Information

Item Value
RNA id LOC111190150
length 375
RNA type V_segment
GC content 0.47
exon number 2
gene id LOC111190150
representative True

Chromosome Information

Item Value
chromosome id NW_019172441.1
NCBI id APWO02002039.1
chromosome length 306493
location 165242 ~ 165724 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGTTCTCCACACTGATCCatctactgctgctactaacaGCTTCTGCACCCTGGGTTGGTTGTATTGAGCTGGATCAGCCTGCAGTCATGGTTGTTAAACCTGGAGAATCTTTCTCCATCGCCTGTAAGATCACTGGATATTCAGCTGAAGGAGGCTGTAATAACTGCTGTACTAACTGGATACGACACTCAATAGGAAAAGCTCCAGAATGGATTGGATGGTTCTGCAGCGAATACAAGAGTGGGGCAATAAGCACAATGAACAGCAAGATCAGTTTCACTGCAGAATCTTCCAgcaacacagtgtttttacaggGGCAGAACTTCCAGTCTGaggacagcgctgtgtattACTGCGTCCGGAACACACAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384778 lncRNA upstream 30515 129750 ~ 134727 (+) False G280313
TU384740 lncRNA upstream 125574 38119 ~ 39668 (+) True G280298
TU384738 lncRNA upstream 127586 36371 ~ 37656 (+) True G280297
TU384731 lncRNA upstream 133709 22417 ~ 31533 (+) True G280290
TU384807 lncRNA downstream 11855 177579 ~ 177994 (+) False LOC111190164
TU384824 lncRNA downstream 26014 191738 ~ 247699 (+) True G280332
TU384826 lncRNA downstream 41850 207574 ~ 207855 (+) True G280334
TU384837 lncRNA downstream 74630 240354 ~ 249052 (+) True G280338
TU384845 lncRNA downstream 86939 252663 ~ 254221 (+) True G280345
XM_022663913.1 mRNA downstream 68088 233812 ~ 236578 (+) True LOC111190154
XM_007242509.3 mRNA downstream 74624 240348 ~ 244545 (+) True LOC103040202
XM_022663914.1 mRNA downstream 80856 246580 ~ 258409 (+) True LOC111190155
XM_022663915.1 mRNA downstream 120335 286059 ~ 287629 (+) True LOC111190159
TU384804 other upstream 5194 159305 ~ 160048 (+) True LOC103032846
LOC103032846 other upstream 5235 159300 ~ 160007 (+) False LOC103032846
LOC111190149 other upstream 14935 149709 ~ 150307 (+) False LOC111190149
TU384803 other upstream 14943 149657 ~ 150299 (+) True LOC111190149
LOC111190136 other upstream 19168 145407 ~ 146074 (+) True LOC111190136
LOC111190145 other downstream 5537 171261 ~ 171809 (+) True LOC111190145
LOC111190128 other downstream 9457 175181 ~ 175779 (+) True LOC111190128
LOC111190164 other downstream 11810 177534 ~ 178182 (+) True LOC111190164
TU384808 other downstream 14300 180024 ~ 180545 (+) False G280328
TU384809 other downstream 14300 180024 ~ 226732 (+) True G280328

Expression Profile