RNA id: TU384738


Basic Information

Item Value
RNA id TU384738
length 272
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G280297
representative True

Chromosome Information

Item Value
chromosome id NW_019172441.1
NCBI id APWO02002039.1
chromosome length 306493
location 36371 ~ 37656 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTCAGTAGAGCACTTTACTTCTTTCCCAGAAAACCATTCAGATTCACTGAGGGTCAAATTACTGGTTTTAGTAAATGGTGCTGTCGTCTCTTTAACATTATCTGTTACGGTACTTCCTGCTGATGCTGGTTGTCCTCCAAATGTCCACGACACTTTTGCTGCTTCCACTTCATTTTTATTATCACCAGTTATGACACAGGTGATTACGGCTTTATTCTGTACAAAAAGATCCTTCTCAGATGGTGGATTGATCTTTAGAGAGAACTTAtct

Function

GO: NA

KEGG:

id description
ko04662 B cell receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384731 lncRNA upstream 4838 22417 ~ 31533 (+) True G280290
TU384740 lncRNA downstream 463 38119 ~ 39668 (+) True G280298
TU384778 lncRNA downstream 92094 129750 ~ 134727 (+) False G280313
TU384807 lncRNA downstream 139923 177579 ~ 177994 (+) False LOC111190164
TU384824 lncRNA downstream 154082 191738 ~ 247699 (+) True G280332
TU384826 lncRNA downstream 169918 207574 ~ 207855 (+) True G280334
XM_022663913.1 mRNA downstream 196156 233812 ~ 236578 (+) True LOC111190154
XM_007242509.3 mRNA downstream 202692 240348 ~ 244545 (+) True LOC103040202
XM_022663914.1 mRNA downstream 208924 246580 ~ 258409 (+) True LOC111190155
XM_022663915.1 mRNA downstream 248403 286059 ~ 287629 (+) True LOC111190159
LOC107197483 other upstream 20230 15658 ~ 16141 (+) True LOC107197483
LOC111190138 other downstream 6168 43824 ~ 44531 (+) True LOC111190138
LOC111190144 other downstream 19393 57049 ~ 57561 (+) True LOC111190144
LOC103027076 other downstream 44742 82398 ~ 82963 (+) True LOC103027076
TU384788 other downstream 54481 92137 ~ 92613 (+) True G280315
LOC111190140 other downstream 58328 95984 ~ 96561 (+) True LOC111190140

Expression Profile