RNA id: TU384837


Basic Information

Item Value
RNA id TU384837
length 1031
lncRNA type read_through
GC content 0.48
exon number 5
gene id G280338
representative True

Chromosome Information

Item Value
chromosome id NW_019172441.1
NCBI id APWO02002039.1
chromosome length 306493
location 240354 ~ 249052 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGATAGCACGCGGGAGAGCAGCACTACGCACACCGCGGACTGCAAGAGAACGAGGAAAATGGATTTTAAAACCCCTCAGTGCATTGAAGCAAAGGATTATGATGGGGTGGCAGAGATCATTGTAGAGCTGGAAAAGATGAGTGACTCTGAGGAGGtcgtggaggaggaggaggaggatgaggaagaagaggaggaggtcGAAGACTCCGACGATAGCAGCGATAGCTTCGACTCCGCCATAGAGGAGGCCTGTCTGTGGGGAGAGGACTCTGTTGTTGACCAggAACAACTGTGGACGACAAAGTGCTGACTGCTATCAGCAGGGTATCTTGCCAGTTGACCCAATTATCTGAGCAGCTGAAAGGAGTCAGAGAAGAAGTGAACACCAGACTGCGGTCCCTCGAGGAAAGACTAGCTGCTCTGGAGTCCAAACGGAGTAACGATCCCGGTGTAGAGGAGAATAGGAAAAGGCGCACGCACAATCCCAAAATCGTGGGTTCGGAAAAGGTTCAGCGACTTCACAATAGCGAAGTAAACTCCAAACGCTATGAACCCGAGCAGGGgcTAGGCTTACCTCACAACAGGGCAGTGACTTTCTATTTGGTGGAGGCTTTACTGGCAAGCCCAGGTTTTCAGAGCAAAGATAAAGACTTAATCCTATCTGCTTGAGACCAGGGAGGAATTGCTTAAGAAAGAAGAATTTGAATTCTGGAATGGGGTCACCAATGATCTGATGTCTGACGAAGAGGACGGCACTTTAGACAGAGTGTCTGGGTGGATTATAAGGCCTCCAAAATTCCGTAGCCAGGAGCTCTCTGACCTGTGTGCCACACTTCAAACGAGACTTAAAAAAACTATCCTATGTACATGGCATCACATCACAGATGTCTGTGTATTGGACCGCCTTCTGACAGGCTTCCACCAAGCACATATGATCCAGAGCTGGCCAAAAGACATGTATCACTGTAATATAGTGATCTACTGTTTCATATCCCATGTAGGttaataaagttttttcttttgagtattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384826 lncRNA upstream 32499 207574 ~ 207855 (+) True G280334
TU384807 lncRNA upstream 62360 177579 ~ 177994 (+) False LOC111190164
TU384778 lncRNA upstream 105627 129750 ~ 134727 (+) False G280313
TU384740 lncRNA upstream 200686 38119 ~ 39668 (+) True G280298
TU384738 lncRNA upstream 202698 36371 ~ 37656 (+) True G280297
TU384845 lncRNA downstream 3611 252663 ~ 254221 (+) True G280345
TU384813 lncRNA downstream 11819 260871 ~ 261218 (+) False G280329
TU384851 lncRNA downstream 32004 281056 ~ 281292 (+) True G280350
XM_022663913.1 mRNA upstream 3776 233812 ~ 236578 (+) True LOC111190154
XM_022663915.1 mRNA downstream 37007 286059 ~ 287629 (+) True LOC111190159
LOC103041119 other upstream 1004 238774 ~ 239350 (+) True LOC103041119
TU384815 other upstream 3784 228580 ~ 236570 (+) False G280329
TU384818 other upstream 3784 228580 ~ 236570 (+) False G280329
LOC103040825 other upstream 8451 231287 ~ 231903 (+) True LOC103040825
TU384833 other upstream 8549 231279 ~ 231805 (+) False LOC103040825
TU384814 other downstream 11819 260871 ~ 270848 (+) True G280329
LOC111190165 other downstream 11825 260877 ~ 261488 (+) True LOC111190165
LOC111190156 other downstream 18633 267685 ~ 268169 (+) True LOC111190156
LOC103040519 other downstream 21256 270308 ~ 270906 (+) True LOC103040519
TU384839 other downstream 23268 272320 ~ 273071 (+) True LOC111190157

Expression Profile