RNA id: XM_007242509.3


Basic Information

Item Value
RNA id XM_007242509.3
length 2434
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC103040202
representative True

Chromosome Information

Item Value
chromosome id NW_019172441.1
NCBI id APWO02002039.1
chromosome length 306493
location 240348 ~ 244545 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAGTTCGGGATAGCACGCGGGAGAGCAGCACTACGCACACCGCGGACTGCAAGAGAACGAGGAAAATGGATTTTAAAACCCCTCAGTGCATTGAAGCAAAGGATTATGATGGGGTGGCAGAGATCATTGTAGAGCTGGAAAAGATGAGTGACTCTGAGGAGGtcgtggaggaggaggaggaggatgaggaagaagaggaggaggtcGAAGACTCCGACGATAGCAGCGATAGCTTCGACTCCGCCATAGAGGAGGCCTGTCTGTGGGGAGAGGACTCTGTTGTTGACCAGATCGAATCTGGGTCTGATAAGGAGTGGGAGCCATTTCCTAAACGGAGTAGGTCGGTCACCACGACTCCAACTGCATCTCAGCAGTCACCTTCCCCTATGCGTAGAACCTCAACCCTCACCCcaactaagaaaaataagaaggCACAGGGAAGGTCCAGCTCACCAAGAACACCAAGAAAGCAAGTTAATGGTGCATCTCGGGTCTTGGAGCTGGGTGAAGAGGAAAGGTGGAATGACATTACTGATGAGGATAAACAACCCAGTCTCTTCAGATTTCATCCAAAACGACCCCCAGGACCACAACTTTTGCCAGGCAAAACATACTCACCTCTGCAGTTGTTCCAGCTGTTTTTCAGCTCTTCTGTTGTCCAAACTCTTGTGGACAACACAAACAAGTTTGGCAAGATTTCAGCTGCAGGTGGAAAGAAGCTAAAGTGGACCCCAGTTACTGTAAAAGAGTTTTATGCCTTCATTGGACTTGTTGTGTACATGGGCTTGGTAAAGGTGAAGAGTATCATGGATTTATGGTCCAAGAAACAACTCTATCAATTTCAGTTCCCCTCCATGGTGATGAGCAGCAAGAGATTTACTGCTATTTCAAGCAATCTCCATTTGTCTGACCCAGAGGAGGATgcagaaaacatgaaaaagaagGGAACTCCGGATTATGACAGACTGTTCAAAATAAAGCCCCTGTACACCGACATCCTCTCAGCATGCCACAGTTTTTTCCAACCCAGGAGAGAACTGTCCATAGATGAACGAATGGTGGCTTCAAAAGCAAGAACTGGACTAAAGCAGTACATGAAGGCAAAGCCCACTAAATGGGGCTTCAAATTGTTTATTTTGGCAGATTCAGCAAGTGGGTACACATGgaatttttttgtgtatgaaGGGAAAAGTCCCTTTGCATCAGGAAAAGGACTAAGCTATGATACGGTCAAAACACTCCTGGATTATTCATTACTCGGCCATGGATACATGGTGTACATGGACAATTTTTACACCAGTCCAACCCTTCTTTCTGATCTGCTGCAGGAAAACACTCTTGCTTGTGGAACCCTTCGTACCAATCAACTAGGACTTTCACTCCCAAAAAATAATGAACTTCCAAAGAGGGCCGAAAGAGGAGACATCCGCTGGTACAGACAAGGAAAGCTGCTCTACGTCAAATGGATGGACACGAGAGAGGTTACCATGTGTTCCACAATGCACAAGGCCTATAAAGGGGACACAGTGAAAAGAAAGGTAAAAAGCAAAGAAGGTGTGTGGGATATCACAACTGTACCAATTCCGGCTGCTGTAAAAGATTACAATAAGCACATGGGTGGCGTCGACCTTTCAGATGCGCTGATTGGTTACTACCATGTCCTCCACAAGTCAAGAAAATGGTACAAGACATTCTTTTTCCACTTCATTGATATTGCGATTGTTAACAGCTTCATTCTGCACCAACAACTGGCTGACGTCACTGGACAAGCCACCCTCACACAAAAAGCCTTCAGAGAAGCCTTAGTGATGGAACTTACAAAGACTGTCAGAAAATCAAAAGATGTTTCAGGACCTAAAGGCCAGTCAAAAGAGGAAAAGCCCACTAGAACTTCAAGCCCATCCAAGCGGACAGCCCAGGATGAGATGTGCATGCCTGCATTCTATGGCACTGATGCTACTGCAGGAAGAAAGAAATGTGAGCACTGCAAAAAGGACGGACGTCAAACAAAAACTCCAGTTTTCTGTGCAAAATGTGGCGTGCCTTTGTGCCTCGTACCAGCACGCAACTGCTTCAAGCTGTGGCATGAAgacctctaaaaaaaaaaaaaaaaacacacacacatgcagaaatGTAGATAGTTATTGTACATTGaaatttttatatcttttataatacgtgttttttttttttgatagaaaGGCAGAAATGTAAATAGGTGCTGTTATTAgttacttttctattttttatactgCGCTTTGTATCTTGTATCAAGGCAGAAatgtaaatagttttatttgtacATTATTATTTCTGTCTTTATAATACAGTTTGTAAATCTTGCAgagtaaaacaaagaaatgaatcTTCTGGCTTGTTTCACTTATTATTGTTCTGATTTGGCtctataataaagaaaaactgaaaaaaaaaa

Function

GO:

id name namespace
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384826 lncRNA upstream 32493 207574 ~ 207855 (+) True G280334
TU384807 lncRNA upstream 62354 177579 ~ 177994 (+) False LOC111190164
TU384778 lncRNA upstream 105621 129750 ~ 134727 (+) False G280313
TU384740 lncRNA upstream 200680 38119 ~ 39668 (+) True G280298
TU384738 lncRNA upstream 202692 36371 ~ 37656 (+) True G280297
TU384845 lncRNA downstream 8118 252663 ~ 254221 (+) True G280345
TU384813 lncRNA downstream 16326 260871 ~ 261218 (+) False G280329
TU384851 lncRNA downstream 36511 281056 ~ 281292 (+) True G280350
XM_022663913.1 mRNA upstream 3770 233812 ~ 236578 (+) True LOC111190154
XM_022663914.1 mRNA downstream 2035 246580 ~ 258409 (+) True LOC111190155
XM_022663915.1 mRNA downstream 41514 286059 ~ 287629 (+) True LOC111190159
LOC103041119 other upstream 998 238774 ~ 239350 (+) True LOC103041119
TU384815 other upstream 3778 228580 ~ 236570 (+) False G280329
TU384818 other upstream 3778 228580 ~ 236570 (+) False G280329
LOC103040825 other upstream 8445 231287 ~ 231903 (+) True LOC103040825
TU384833 other upstream 8543 231279 ~ 231805 (+) False LOC103040825
TU384814 other downstream 16326 260871 ~ 270848 (+) True G280329
LOC111190165 other downstream 16332 260877 ~ 261488 (+) True LOC111190165
LOC111190156 other downstream 23140 267685 ~ 268169 (+) True LOC111190156
LOC103040519 other downstream 25763 270308 ~ 270906 (+) True LOC103040519
TU384839 other downstream 27775 272320 ~ 273071 (+) True LOC111190157

Expression Profile