RNA id: XM_022663913.1


Basic Information

Item Value
RNA id XM_022663913.1
length 725
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC111190154
representative True

Chromosome Information

Item Value
chromosome id NW_019172441.1
NCBI id APWO02002039.1
chromosome length 306493
location 233812 ~ 236578 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTTAACTGATCACACCAGCACCATGTTCTCCATATCATTACTGCTGATCCAGCTGCTGACTATAACATgTGTTCACTCTCAGGTTGTTCtcacacagtctgaacagtcaGTAGCAGTGGCTCCAGGAGGATCCCACAAACTCACCTGTAGCTGCAGTGGATTCACTGTGAGGGACTATGGCATGCACTGGATCAGACAGGCTCCTGGTAAAGGACCGGAatggattatttattattattctgattCTACTAAAAAATTTTCCCAGGCAGTGCAGGGCAGATTCACAGCATGCAAGGACGACTCAAAATTCGACCTGCAAATGACTCAACTGAAGCCTGAAGATACTGCAGTGTATTACTGTGCTAGAGATGCACTGTGGTGGAACTCATACAGACAGCTGTACAAAAACcctgcaaGTGTTCACTGTAATGAACTGACCCAACCTGGATCCATGATGGTGCGTCCAGGTCAGAGTCTGACCATCAACTGTAAAGTTTCATATTCAGTTACAAGCTGGAGCACAGGTTATATCAGACAACCTGCAGGAAAAGCTCTGGAGTGGATTGGAAATATCTACATGGATGGTAGCACAGACTacagtaataaactaaaaaacaagTTCAGCATCTCCAGAGACACTGGAACTAACACAATAACATTACAAGGACAGAACCTGCAGACTGAAGATACAGCTGTGTATTACTGTGCAAGACTCTCACAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384826 lncRNA upstream 25957 207574 ~ 207855 (+) True G280334
TU384807 lncRNA upstream 55818 177579 ~ 177994 (+) False LOC111190164
TU384778 lncRNA upstream 99085 129750 ~ 134727 (+) False G280313
TU384740 lncRNA upstream 194144 38119 ~ 39668 (+) True G280298
TU384738 lncRNA upstream 196156 36371 ~ 37656 (+) True G280297
TU384837 lncRNA downstream 3776 240354 ~ 249052 (+) True G280338
TU384845 lncRNA downstream 16085 252663 ~ 254221 (+) True G280345
TU384813 lncRNA downstream 24293 260871 ~ 261218 (+) False G280329
TU384851 lncRNA downstream 44478 281056 ~ 281292 (+) True G280350
XM_007242509.3 mRNA downstream 3770 240348 ~ 244545 (+) True LOC103040202
XM_022663914.1 mRNA downstream 10002 246580 ~ 258409 (+) True LOC111190155
XM_022663915.1 mRNA downstream 49481 286059 ~ 287629 (+) True LOC111190159
LOC103040825 other upstream 1909 231287 ~ 231903 (+) True LOC103040825
TU384833 other upstream 2007 231279 ~ 231805 (+) False LOC103040825
LOC103039884 other upstream 4691 228575 ~ 229121 (+) True LOC103039884
TU384809 other upstream 7080 180024 ~ 226732 (+) True G280328
LOC111190153 other upstream 11858 221495 ~ 221954 (+) True LOC111190153
LOC103041119 other downstream 2196 238774 ~ 239350 (+) True LOC103041119
TU384814 other downstream 24293 260871 ~ 270848 (+) True G280329
LOC111190165 other downstream 24299 260877 ~ 261488 (+) True LOC111190165
LOC111190156 other downstream 31107 267685 ~ 268169 (+) True LOC111190156
LOC103040519 other downstream 33730 270308 ~ 270906 (+) True LOC103040519

Expression Profile