RNA id: XM_022663915.1


Basic Information

Item Value
RNA id XM_022663915.1
length 813
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC111190159
representative True

Chromosome Information

Item Value
chromosome id NW_019172441.1
NCBI id APWO02002039.1
chromosome length 306493
location 286059 ~ 287629 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACTTTAATAGattcccacacacacaacagacagTCATGTTCTACACACTTCTGCTAATTCTGACCACAGCAGCTTCCTATGTTCAGTGTGAAATCTCTCTCACTCAGCCGAGTTCAGTGATGATAAAACCAGGAGGATCTCTGAGCATCAGCTGTAAAGTATCTGGTTATTCAGTTACTGATAACAGCTACGCCACAGGTTGGATTCGACAGCCTGCAGGAAAAACTCTGGAGTGGATAAACTACATCTGGGGGGGTGGGAGCACTTACCAAAAAGATTCTCTGAAAAGCAAGTTCAGTATTTCTAAAGATTCCTCCAGCAGCTCCGTCACTTTACAAGCTCAGAACATGCAGCCTGAAGACACAGCTGTGTATTACTGTGTGAGGAGACCCCACAGTGCTGAAAACATACCCAAGACCCTTAcaaaaacacccacacacacacacatgcagttcATATGCCAACACAtggatatatatacatactgTTGTAGATGTCAGACACTGACTGAGTCAGAGCCAGCGCTCATTAAACCTGGAGGATCTCACACTCTCACCTGTACCTACTCTGGGATGGGTGATAGCTATATGTCCTGGGTTAGACAGGCTGCTGGAAAAGGGCTTGAATGGGTTGCATACATTCAAATATGGAGCACATATTACTCTCAGTCAGTTCAGGGAAGATTCACCATCTCCAGAGATAACAGTAAGAAGCAGGTGTATCTGCAGATGAGCAGCCTGAAGACTGAAGACACTGCTGTTTATTATTGTGCTCGAGCAGCACACTGATACAAGACCCTGCAGAGCTGTACAA

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384851 lncRNA upstream 4767 281056 ~ 281292 (+) True G280350
TU384813 lncRNA upstream 24841 260871 ~ 261218 (+) False G280329
TU384845 lncRNA upstream 31838 252663 ~ 254221 (+) True G280345
TU384837 lncRNA upstream 37007 240354 ~ 249052 (+) True G280338
TU384824 lncRNA upstream 38360 191738 ~ 247699 (+) True G280332
XM_022663914.1 mRNA upstream 27650 246580 ~ 258409 (+) True LOC111190155
XM_007242509.3 mRNA upstream 41514 240348 ~ 244545 (+) True LOC103040202
XM_022663913.1 mRNA upstream 49481 233812 ~ 236578 (+) True LOC111190154
LOC111190158 other upstream 171 284463 ~ 285888 (+) True LOC111190158
TU384832 other upstream 3161 282275 ~ 282898 (+) True LOC111190162
LOC111190162 other upstream 3166 282301 ~ 282893 (+) False LOC111190162
LOC111190157 other upstream 9834 272531 ~ 276225 (+) False LOC111190157
TU384839 other upstream 12988 272320 ~ 273071 (+) True LOC111190157
LOC111190133 other downstream 950 288579 ~ 289221 (+) True LOC111190133
LOC111190160 other downstream 2704 290333 ~ 290884 (+) True LOC111190160
LOC111190137 other downstream 6675 294304 ~ 294920 (+) True LOC111190137
LOC107197420 other downstream 12040 299669 ~ 300531 (+) True LOC107197420

Expression Profile