RNA id: TU105532


Basic Information

Item Value
RNA id TU105532
length 305
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G78279
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 5177075 ~ 5178793 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGACGTGAGCAGGTGAGCCTGCCGGACAGGTAACTGCGCGAGCTCCGGCTCAGCGATTTGGGTTGTTTATACAGGAAATCTTAATTTCTATAAGATTTTCTGTGTTTTGGATTTTGGATTGTGTAGCTGGGTTGTTTAGCAGCTGATCTCCAGCTCCTGATCCAGGATGAAGTCTGATGGTGAATCAGCAAACAGGCCGGATAACACGGCCTTCACCCAGCAGCGTCTCCCTGCGTGGCAGCCCATGCTCTCTGCTGGGATCGTCATCCCGCTCTTCACTCTCATCGGCCTGGCTTTTATCGGCA

Function

GO: NA

KEGG:

id description
ko04530 Tight junction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105516 lncRNA downstream 529092 4610006 ~ 4647983 (-) True G78266
TU105515 lncRNA downstream 567926 4607908 ~ 4609149 (-) True G78265
TU105483 lncRNA downstream 658765 4438587 ~ 4518310 (-) True G78241
TU105371 lncRNA downstream 846460 4329092 ~ 4330615 (-) True G78143
TU105367 lncRNA downstream 849427 4326980 ~ 4327648 (-) True G78140
TU105553 lncRNA upstream 10215 5189008 ~ 5204565 (-) True G78296
TU105552 lncRNA upstream 23302 5202095 ~ 5204565 (-) False G78296
TU105560 lncRNA upstream 25854 5204647 ~ 5204974 (-) True G78302
TU105555 lncRNA upstream 26293 5205086 ~ 5207646 (-) True G78298
TU105567 lncRNA upstream 127243 5306036 ~ 5306240 (-) True G78309
XM_022672631.1 mRNA downstream 498665 4666571 ~ 4678410 (-) False togaram1
XM_022672630.1 mRNA downstream 498665 4666571 ~ 4678410 (-) True togaram1
XM_022672629.1 mRNA downstream 511588 4626434 ~ 4665487 (-) True fancm
XM_022672628.1 mRNA downstream 511589 4624101 ~ 4665486 (-) False fancm
XM_022672627.1 mRNA downstream 511589 4624101 ~ 4665486 (-) False fancm
XM_007258927.3 mRNA upstream 31936 5210729 ~ 5262996 (-) True luzp1
XM_007230052.3 mRNA upstream 1510511 6689304 ~ 6707961 (-) True LOC103024242
XM_022672638.1 mRNA upstream 1510511 6689304 ~ 6695275 (-) False LOC103024242
XM_007230053.3 mRNA upstream 1534663 6713456 ~ 6722276 (-) True LOC103024548
XM_022672639.1 mRNA upstream 1570325 6749118 ~ 6768199 (-) True nphp1
TU105293 other downstream 970691 4045434 ~ 4206384 (-) True G78083
TU105210 other downstream 1336505 3834562 ~ 3840570 (-) True G78023
TU105108 other downstream 1462798 3691607 ~ 3714277 (-) False prkd1
XR_002650301.1 other downstream 1538160 3633094 ~ 3638915 (-) True LOC111193170
TU105040 other downstream 1828086 3297582 ~ 3348989 (-) True G77892
TU105554 other upstream 5999 5184792 ~ 5186358 (-) True G78297
TU105931 other upstream 2020556 7199349 ~ 7220854 (-) False LOC111193177
XR_002650306.1 other upstream 2097607 7276400 ~ 7277784 (-) True LOC111193180
XR_002650309.1 other upstream 3454082 8632875 ~ 8641745 (-) False spdya
TU106477 other upstream 3472144 8650937 ~ 8654310 (-) False LOC111193185

Expression Profile