RNA id: TU106340


Basic Information

Item Value
RNA id TU106340
length 2887
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id G78889
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7977800 ~ 7981423 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAAAAACATATAAGCAGTAAGTGGGTGTGGCTTAAGCTATACAGTTTGCATAATGCTAATTTAAGTTCTTGTGGCTTTAAACACCATGGCTGATCAGCTCCATTTGCATTCAGCTCCGACTACATTAAATGTACTCGCGTATTGGAACACCTGCTCATGCATTGTTCCCCAAAATTAACTGTATTAACAAAACAAAGAGTGTGTTATGCTATTGTGGAAGTTTCTTCTCTCCAGGAAAGGTTTTctacaatatttgtttttaattgctgtgaggatttgtttGCTTTCAGTGGCAAGAGCATGAATGAGGTTAGTCAGAATGTTGCGTGATCAGCTCACCTCGTCCCCAACAACCAACTTAATCCTGTTCTAGGAAATAGACGCATGGTGTATCTACATTTAGTAGTACCACACTATTCCTGTACACTTACATTTAATGCAGTTCACAACAAGGCATCTCTGAATACAGTatcatataccgtatttttcgcacaataaggcacactggattataaggtgcattatgcaacactagtaagaaacaggggtgtcgtcatgttttccttctatttcagcaggtcttgccgctggttGGTGGTGGGGgtaactgaaaaaaaactgtacttcttaaaaaagaacattttaaagtcaaacgagcgctggatttCTCTcctgggtgagtaaagcgcttctgtttatttacagtaagcttagatttccagattttcactaaggctgggtgcagcgcattagcattagcggctaaccgctagccacGGTTATGGTTGGGAAACTCGGCTTCATGGCTCCTTACAacatgactggtaaaattcatacataaggcgcactggattataaggcatgcTAACGAATTTaagtgtgcaaaaaatacggtagaaACTTAAGTAAGTCAAATTTTGAGGCCGGTTAAGGAATTTGTTACATTTCAATATAGATTTTGATATTTTACACCATAATCGAAATTATAGATATATCCTATTTCAGTAGGAAAAAATTTGCCCCACCACTACAGATGTTCTCACTTAACCAAGACGTGTTTGATGCTTCACTTCTAACAAACATTGAAAGTCAGTGGTCACTTAAATATTTTCCATATATTTAAGAATATGCCCATCCCTGTGCCTATACACAACCACAGTGTCTCTTGAGGGTTTGCAgtttgttgtttctttttataaacacaacataacaATATTTTCAGctagaaaatgtaaaattctcATTTATTTCTGAACATAAATAGAAGTGACAAATTTAAAACATGAGTTGAGACTAGAATTTAGACCAAACATATCGTGTTCAAGCATCTCTATCTGGAGTAAGTGTAAAATCAGGCAAACTAGATTTGATACCAAACTATTCCTTCAGTTCAACAGAGACTTTTGACCTTGTGAGACCCTGTTTGATAACATGTGACCTGCAAAAGGTCATTGGTTCACATCTGTGGCCAAATAATAAAACCCAAGTTGTAAAGAAGTGCCACGTGACCTCTTAATGAGGTAAGAAGGAACTATTTTCGGTTCCTTTAATTTAAGAACAGCAAATGATCTAGTCCCATCACAGGTTTTATAAGCATCCCCCATAACTTCCTGTGTGCTATGTTCTGATGATTTGGGAGATATGATGAGTGTTGTGCTGCAGATCATGTGTTCATCTGTCTACATTTCTTATAATTGTGTTTAGTGGATTTTAAGTTAAGTATACTGTCTCTAACTCAAAGGAAGTTCTCAATTTAAGCATCTTGTGCTTCCAATTCTTATCAGACACTGGAGAAACCGTGCGGTGTTGGTGGTATTGCCTGCTGATGATTGAAGAAGTTATAGtgtgctttttgtttgctgTTTCGAAGCAGAAAATCTGTTCTTTTGGGTTCTGAATGTAGAGTGAAAATGCTTCAAAGATTCCTCACAGAAGCGTCGCTGCATCTTGAGTTCCAATGTCaagcctgtttttctgcattcaGCAGTATGCAGTGAAGTTTAGCATGAAAatgaaaacaacagaaaacaacatTTTCACAGTCAGTATATTTCTGCACTTGTTATGCACAGTATAGCAGATGTATTCTCTTGGTATAAACTGTAAACATAAGGTCGAAACATAAAGTCGTAACCTTGTGATCAATTCAGGGGGTTAGAGCCCAGGATTGTTCATGCTATGGTGCTCTTGGACCAGGGAAAGTATTTTGCTCAGGGGTACAACAGTGGCTGCTTAATGAATATGGGTATTAAATCCACAACCCTGTGGTCAATTGAAGGGTCAAAGCACAGGGTAATTCGTGATACAGTGCCCCTGGAGCAGAGATGGTTAAGTATCTTGCTCAAGACTCAACAATGGCTGCTTTAATTAATGTGGGTATTGAACccacaaccatgtGATCAATCAATTTAGGGGTCAAAGCAGAtagaatatccctggtttttaatcacagttttcatgcatcttggtatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaagattctgcaagcagttcagtttggtttgatggcttgtgatcatccatcttcctcttgattatattccagaggtttttaatttggtaaaatcaaagttcAGTCTAAATATTCTGTTATCCCACGACTTTCGGCGTGTCCGTgcatggattaaaataaaattattcttATTTATCCCTCAAAGAACCTCTTTTAGCGCcgtatgaagcttacagcataACCACCATGGCTGAACTTTAACCTGCAGTGGATGAATTCAGTGCTCTGTGGAAGCCACTATTAGATGATCTGACCAAATTGAATTAATTcaaattcattttcattttcttgcCGTTTtgatactactttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106333 lncRNA downstream 62588 7849753 ~ 7915212 (-) True G78885
TU106296 lncRNA downstream 210473 7758588 ~ 7767327 (-) False G78859
TU106315 lncRNA downstream 212304 7762967 ~ 7765496 (-) False G78871
TU106314 lncRNA downstream 212936 7762967 ~ 7764864 (-) True G78871
TU106295 lncRNA downstream 230950 7745303 ~ 7746850 (-) True G78859
TU106343 lncRNA upstream 547 7981970 ~ 8040192 (-) True G78891
TU106367 lncRNA upstream 169032 8150455 ~ 8151276 (-) True G78911
TU106399 lncRNA upstream 310839 8292262 ~ 8294085 (-) True G78940
XR_002650307.1 lncRNA upstream 398066 8379489 ~ 8415110 (-) True LOC111193182
TU106342 lncRNA upstream 447095 8428518 ~ 8432284 (-) True G78890
XM_022672469.1 mRNA downstream 10122 7931051 ~ 7967678 (-) True LOC111193126
XM_022672663.1 mRNA downstream 51841 7825663 ~ 7925959 (-) True arhgef10
XM_007257573.2 mRNA downstream 157598 7811870 ~ 7820202 (-) True kbtbd11
XM_022672661.1 mRNA downstream 219597 7747106 ~ 7758203 (-) True LOC111193181
XM_007257579.3 mRNA downstream 327925 7629780 ~ 7649875 (-) True LOC103025534
XM_007257572.2 mRNA upstream 4738 7986161 ~ 7996819 (-) True cln8
XM_022672470.1 mRNA upstream 27124 8008547 ~ 8222318 (-) True dlgap2
XM_022672666.1 mRNA upstream 529267 8510690 ~ 8517648 (-) False LOC111193183
XM_007257568.3 mRNA upstream 538652 8520075 ~ 8527936 (-) False zbtb8a
XM_007257569.3 mRNA upstream 538652 8520075 ~ 8527661 (-) True zbtb8a
XR_002650306.1 other downstream 700016 7276400 ~ 7277784 (-) True LOC111193180
TU105931 other downstream 756946 7199349 ~ 7220854 (-) False LOC111193177
TU105554 other downstream 2791442 5184792 ~ 5186358 (-) True G78297
TU105293 other downstream 3771416 4045434 ~ 4206384 (-) True G78083
TU105210 other downstream 4137230 3834562 ~ 3840570 (-) True G78023
XR_002650309.1 other upstream 651452 8632875 ~ 8641745 (-) False spdya
TU106477 other upstream 669514 8650937 ~ 8654310 (-) False LOC111193185
XR_002650312.1 other upstream 1856555 9837978 ~ 9838726 (-) True LOC111193187
XR_002650315.1 other upstream 2053263 10034686 ~ 10071884 (-) False LOC103027354
TU107210 other upstream 2947217 10928640 ~ 10929596 (-) True G79582

Expression Profile