RNA id: XM_022672477.1


Basic Information

Item Value
RNA id XM_022672477.1
length 4210
RNA type mRNA
GC content 0.47
exon number 20
gene id LOC103029370
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 14730508 ~ 14798604 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gttctttttctttaaagagTCGGTTCAAAGCATCGACTCGTTTCTCACTCCAGGAAGCCCTGCTCGCTCGGAGGCGGAGTGAAGTTTTGCTCCTGGCCGTGATAAAGTCTCCGGGACCCTGCAGCGCTCCTCCACATTTCCCCTTACGGAGCTCCAGCCATGGCGAAGCCGCTGAGTGACCAAGACCGCCGCAAGCAGATCAGCGTGCGCGGCATCGCGGGGGTCGGAGACGTCGCTGAGATCAAGAAGGGCTTCAACAGGCACCTGCACTTCACGCTGGTGAAGGACAGGAACGTCGCCACGCCACGGGACTACTACTTCGCCCTCGCGCACACGGTCCGGGACCACCTGGTGGGCCGCTGGATCCGGACCCAGCAGTACTACTACGAGAAGGACCCCAAGCGTGTCCACTACCTTTCCTTGGAGTTCTACATGGGCAGAACTCTGCAGAACACCATGATTAACCTGGGCCTGCAAAATGCCTGTGATGAAGCCATCTATCAGCTGGGACTGGACTTGGAAGAGCTGGAGGAGATAGAGGAGGATGCTGGACTGGGCAATGGTGGATTGGGGCGACTTGCAGCTTGTTTCCTGGACTCCATGGCCACACTGGGTCTGGCAGCGTATGGTTATGGCATCCGCTATGAGTTTGGAATCTTTAACCAGAAGATTTCTCATGGTTGGCAGGTGGAGGAAGCAGATGATTGGCTACGCTATGGCAACCCCTGGGAAAAAGCCCGTCCGGAGTACATGCTGCCAGTGCATTTCTATGGTAGAGTGGAACAGACAGGAGATGGGCCAAAGTGGGTGGACACCCAGGTGATCCTGGCAATGCCATATGACACTCCTGTTCCCGGCTACAAGAACAACACGGTCAACACAATGAGACTGTGGTCAGCCAAAGCCCCCAATGACTTCAACCTGCAGGAGTTTAATGTTGGGGACTATATCCAGGCTGTCCTGGACAGGAACCTGGCTGAGAACATCTCCAGAGTTCTGTACCCCAATGATAATtTTTTCGAGGGTAAGGAGCTGCGCTTGAAGCAGGAATATTTTGTGGTGGCCGCCACCCTGCAGGACATCATCAGACGCTTTAAATCCTCCAAGTTCGGCTGCCGGGACCCTATACGCACTTCCCTCGAGAGCTTTCCTGATAAGgTGGCGATCCAGTTGAATGACACTCATCCTGCGCTGGCTATTCCTGAGCTCATGAGGATATTCGTGGATGTGGAGAAACTGGGCTGGGAGAAGGCCTGGGAGATTACCACAAAAACCTGCGCATACACCAACCACACCGTGCTGCCGGAGGCTCTGGAGCGCTGGCCTGTCTACATGTTCGAGAAACTTCTACCCAGACACTTAATGATCATCTATGAGATCAATAAGAGGCACCTGGATAGAATAGCAGCGCTGTACCCCGGCGATACGGATCGTTTGCGGAGGATGTCTCTGATCGAGGAGGGTGATCCGAAGAGGATTAACATGGCTCACCTGTGTGTGGTGGGCTCTCACGCAGTGAACGGAGTCGCTCGCATACACTCGGAGATCGTGAAAGACACAGTGTTTAAAGACTTTTACGAAGTGGAGCCGGAAAAGTTCCAGAACAAGACAAACGGAATCACACCCCGCCGCTGGCTGCTGCTCTGCAACCCTGGCCTGGCTGAACTCATCGCTGAgagttcagccactgatctgTTCGAGCTGAAGAAGCTGCTGAATTACGTTAATGATGAGGCATTCATCAGGGACGTGGCCAAAGTCAAGCAGGAGAATAAGCAGAAGTTAGCTGCATATCTGGAAAAGGAGTATAAGGTGAAGATCAATCCTGAGTCCATCTTCGACATTCAGGTCAAAAGAATCCACGAGTACAAGAGGCAGCTGCTCAACTGCCTCCACATCATCACCTACTATAACAGAATCAAAAAAGACCCAAACAAAAAATTTGTTCCAAGAACAATAATGATTGGAGGAAAGGCTGCACCCGGGTATCACATGGCTAAGATGATCATAAAGCTGATCACCTCGGTGGGGAACGTGGTGAATAATGACCCTGTGGTGGGAGACCGGCTGAAGGTGATTTTCCTAGAGAACTACAAAGTTTCCCTCGCAGAGAAAGTGATCCCAGCAGCAGATCTGTCAGAGCAGATCTCCACGGCGGGCACAGAAGCTTCCGGAACAGGAAACATGAAGTTCATGCTGAATGGAGCTCTGACCATCGGCACCATGGACGGAGCCAATGTGGAGATGGCTGAGGAGGCCGGGGAGGAGAACCTCTTCATCTTCGGCATGAGAGTGGAGGATGTGGAGGCCATGGACCGCAAAGGATATAATGCTCAAGAGTACTATGACCGTCTACCGGAGCTCCGCCAGGTGATGGATCAGATCCGTACCGGCTTCTTCAGCCCTGCAGAACCAGAGATGTTTAAAGACATTGTCAACATGCTCATGAATCATGATCGGTTCAAGGTATTTGCTGATTATGAGGCTTACATCAGCTGTCAGGAGAAGGTCAACAACCTTTACAAGAACCCAAAAGACTGGACCAAGAAGGTGATCAGAAACATTGCAGCTTCTGGCAAATTCTCCAGCGACCGCACCATCTCTGAGTACGCTCGGGAAATCTGGGGGGTGGAGCCATCGGCTGTGAAGATACCTCCACCCAACGAGCCTCGAGACTGAGAGGCCAGACGTGGTTGAATTGGCCAATGATAATTGGTGATGCCGGCCAAATCcctccctgttttttttacatccttTTGTTGTCTCCTGTCTAAAGAATTTCAAGAATTGTAATTGCTCTGAATTTATAGTTCAGTTTGGTTGCAGCTTTACTGTCCATGACcattatctctcactctcttaacATGACCAGGGAAGGCCTTTCTGAGACCAagctgatgtttaaaaaaatacattcatagTATATCACCATTTACATACCTAGAGATTGAACCACAGCTCATTGTGTTTGTGTACTGTTCTGGTTTAATAGACAACTCTTGGCCAAGAGATCaaagattgtgtttttttttctgattgttaACAGTGCTTTATTGCCTTACccctgtactgtacatcataTCTCAGTGCCTTTACTCATAGCTGTCCAGTCTTTAATCCATTGTCTGCTCTGGTCATTGGTAATTAATAGAGCTGTCAATATAATCGTTTGGCCAGTTATATTCTTGATCTGGATATAAAGACCTCTGGTGTGTTGCGAGATGTGAGATCATCtcttaaacacaaacaaatgatGATCAGCCCAAAATGCCTTCTATTCTATTAGGAATCCTGACTGAATGTAGCCTCAGACTAggcttgcactttttttttactgctattgctttaacactttaacatttatttagcaCTTAGCATTATTCCTCACAGAGCTGTTTTGCACTTTAGCTAGCATTTGAGCTTCTTAAGCTTAGCATAGCGAGCATATTCTATATTATGACTCCTTTCCTATAGATTTGCTCATTCTCCTCACCAGCCTCTTATATCAGTTCATTCAGTTGTGTGTCTCCCACTAAGGCTTTGATGGACAACTGCATAATGTGGTTTATAAGTAAATGCAACCACATTCTGAACTGGATGATGTCCAATAATTTCAGCGTTTTAACATATTGATCTTAATATAACAGCTCTGTTAAagcattatacatttatttacacatttgaAACTGAagcaaatacataaataatataatcatatcagtatgcatgtgtgtgcatgtgttgtcTGACTGGTTTTGCACAATGAGCTGCTTCATTGAGGCCTTTACACTCTTtaaacagtactgtatgtatggagagaatgagagaataaAACTGcttcaaaaacaaaactgttacTGTTCTGAAATGTTTTGCTTTAGTGTTTGATAGTGCTGGGAGAATGTGGGGATTACTAAAACACTTCCTAACATACAGGCAGATTCGGAAGTATTTAAACAGCCTTTTttgatcctttttttttctctgtacagCACCTCAGTGGGTTTGAAAAACAATGTTTGAGCCTGTGAAAATTGATTTGGGTTCCGTAGTAAATGCCGGGTGATAGAAAAATCCCTAACTcattaaatcacatttatgTTTGTTGACTCTGCATTTTGTAAGTCATCGTCATGATTGCAGTGTGTTGAAGTATTAAGACCCCTTTGGCATTTTCACATGTTTTTCACATTAAACCAACAAACCTAAA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0008184 glycogen phosphorylase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG:

id description
K00688 PYG, glgP; glycogen phosphorylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108553 lncRNA upstream 84141 14640117 ~ 14646367 (+) True G80590
TU108550 lncRNA upstream 122978 14593099 ~ 14607530 (+) True G80588
TU108541 lncRNA upstream 151444 14577324 ~ 14579064 (+) True G80580
TU108539 lncRNA upstream 155606 14573582 ~ 14574902 (+) True G80578
TU108526 lncRNA upstream 214684 14513498 ~ 14515824 (+) False LOC103028846
TU108657 lncRNA downstream 61810 14821755 ~ 14822248 (+) True G80662
TU108659 lncRNA downstream 62931 14822876 ~ 14865363 (+) True G80663
TU108638 lncRNA downstream 68144 14828089 ~ 14834462 (+) False LOC111188193
XR_002650334.1 lncRNA downstream 203288 14963233 ~ 14969945 (+) True LOC111193202
TU108676 lncRNA downstream 204134 14964079 ~ 14964754 (+) True G80674
XM_007244621.2 mRNA upstream 7831 14695593 ~ 14722677 (+) True entpd6
XM_015604637.2 mRNA upstream 9154 14695593 ~ 14721354 (+) False entpd6
XM_022672476.1 mRNA upstream 195585 14513410 ~ 14534923 (+) True LOC103028846
XM_022672760.1 mRNA upstream 219478 14495258 ~ 14511030 (+) True LOC103027375
XM_022672759.1 mRNA upstream 219478 14496597 ~ 14511030 (+) False LOC103027375
XM_022672768.1 mRNA downstream 3625 14763570 ~ 14766023 (+) True LOC111193201
XM_022672490.1 mRNA downstream 39888 14799833 ~ 14803032 (+) True LOC111193140
XM_022672770.1 mRNA downstream 46370 14806315 ~ 14835079 (+) True LOC111188193
XM_007244626.3 mRNA downstream 76537 14836482 ~ 14879706 (+) True LOC103032735
XM_007244624.2 mRNA downstream 132482 14892427 ~ 14951079 (+) True peli1
TU108641 other upstream 1709 14725927 ~ 14728799 (+) True G80648
TU108374 other upstream 778310 13925869 ~ 13952198 (+) True LOC103026193
TU107455 other upstream 2654297 12064844 ~ 12076211 (+) True G79761
TU107406 other upstream 2825123 11901095 ~ 11905385 (+) True G79717
TU107323 other upstream 3175369 11554682 ~ 11555139 (+) True G79654
TU108651 other downstream 28657 14788602 ~ 14801837 (+) False LOC111193140
TU108802 other downstream 415050 15174995 ~ 15181398 (+) True LOC111193203
TU108900 other downstream 804042 15563987 ~ 15583331 (+) True G80857
TU109871 other downstream 3700185 18460130 ~ 18464096 (+) False LOC103035760
TU109872 other downstream 3700185 18460130 ~ 18464096 (+) False LOC103035760

Expression Profile