RNA id: XM_007230053.3


Basic Information

Item Value
RNA id XM_007230053.3
length 1150
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC103024548
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 6713456 ~ 6722276 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCCCGCTCACCTGAGTGCTTACACCTTTGCAGAGCAACCACAGTGTCACACAtagacacatacatacacacacacacacactcactcagacacTCAGACACTCACAGGATTATTATGGCCTCCTCAGTGACTGGTAGTGGGCTGCCCAGCGGAGGCAAGGTGTTCAGCACCCTGCCGGACCTCTTCTTCATACCAGAGTTCATATTTGGCGGCTTGGTGTGGACTCTGGTCGCTTCCACACGGGTGTTATTCACAAATCCTCTAGGCTGGGTGATGTTCGTGTCTGTCTTCTGCTTCGTCTTCACCACTATCTGGTTCTTCATTTTCATCGCTGGTGGGAACCAAAGTGGCATTTGGCCTGCCCTGGACGCTGCGTATCATTTTATTGCGGTGGTCTTCTACTTGAGTGCATCCGTACTTTTAGCATATATTACACTCAACATTAAGACAGCCGCTTCCCTAAGTTCTGAAGTCTTTAAGATCTATCAAGAAAGCATCGCTGCTGTGGTGATGGCCTTCATGGCCACCCTGCTGTACTTCATCCACGCCATCATGTCCGCTATCCGGTGGAAATCCTCCTGAACGCAATGAGCTCTGTGCCAGAAcaacaagccaaaaaaaaaaaaaacataaaaaacaaaacgtGCCATCTCCAGCTCTAACTTTAAAGACAATCTggcaaaagattttttttttcttaaaaccacacccacacccacacaaacacacacacctggcaACCATGTCCATGTTAGTAATAGCCCAAGTCCAACCTGATCATTTATACCTGCACTACCTGGACCAAAAGCAACAAACCCCAGAGCCGACATCTGTACTGAGAACCAGAGATCGGAGACTTCAGCATCTTCTCGAACATCTCAGATGTTACTGCTCTCTGACTGAAAGTGTACAGATGCAGCGTGTggattgatgttttatttttttctacatactTTCAGTTGTATTATGACTGTTTGGAGTTTACAGGACTCTTGGTcctgtaaatatgtttttggctttttttcatttcaacTTAGactagatataaaaaaaaaaaaaaaattatatgtgtTCAAATTAAACCACTGGTGTTTTTGTATGTCCAATCGGGAGTGACTAAAggatgaataaatatattttatacattta

Function

GO:

id name namespace
GO:0036344 platelet morphogenesis biological_process
GO:0030220 platelet formation biological_process

KEGG:

id description
ko04512 ECM-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105743 lncRNA downstream 3348 6709239 ~ 6710108 (-) True G78448
TU105742 lncRNA downstream 4625 6708531 ~ 6708831 (-) True G78447
TU105724 lncRNA downstream 30361 6650363 ~ 6683095 (-) True G78435
TU105735 lncRNA downstream 39185 6673803 ~ 6674271 (-) True G78442
TU105725 lncRNA downstream 62857 6629689 ~ 6650599 (-) False G78435
TU105748 lncRNA upstream 4370 6726646 ~ 6726854 (-) True G78453
TU105750 lncRNA upstream 7563 6729839 ~ 6730061 (-) True G78455
TU105758 lncRNA upstream 22689 6744965 ~ 6745556 (-) True G78463
TU105759 lncRNA upstream 23802 6746078 ~ 6747782 (-) True G78464
TU105761 lncRNA upstream 23802 6746078 ~ 6747693 (-) False G78464
XM_007230052.3 mRNA downstream 5495 6689304 ~ 6707961 (-) True LOC103024242
XM_022672638.1 mRNA downstream 18181 6689304 ~ 6695275 (-) False LOC103024242
XM_007258927.3 mRNA downstream 1450460 5210729 ~ 5262996 (-) True luzp1
XM_022672631.1 mRNA downstream 2035046 4666571 ~ 4678410 (-) False togaram1
XM_022672630.1 mRNA downstream 2035046 4666571 ~ 4678410 (-) True togaram1
XM_022672639.1 mRNA upstream 26842 6749118 ~ 6768199 (-) True nphp1
XM_022672644.1 mRNA upstream 172652 6894928 ~ 6924055 (-) False LOC103025187
XM_022672643.1 mRNA upstream 172652 6894928 ~ 6924037 (-) True LOC103025187
XM_022672467.1 mRNA upstream 207494 6929770 ~ 6963428 (-) True acss1
XM_022672647.1 mRNA upstream 368769 7091045 ~ 7193590 (-) False LOC103026718
TU105554 other downstream 1527098 5184792 ~ 5186358 (-) True G78297
TU105293 other downstream 2507072 4045434 ~ 4206384 (-) True G78083
TU105210 other downstream 2872886 3834562 ~ 3840570 (-) True G78023
TU105108 other downstream 2999179 3691607 ~ 3714277 (-) False prkd1
XR_002650301.1 other downstream 3074541 3633094 ~ 3638915 (-) True LOC111193170
TU105931 other upstream 477073 7199349 ~ 7220854 (-) False LOC111193177
XR_002650306.1 other upstream 554124 7276400 ~ 7277784 (-) True LOC111193180
XR_002650309.1 other upstream 1910599 8632875 ~ 8641745 (-) False spdya
TU106477 other upstream 1928661 8650937 ~ 8654310 (-) False LOC111193185
XR_002650312.1 other upstream 3115702 9837978 ~ 9838726 (-) True LOC111193187

Expression Profile