RNA id: XM_007257572.2


Basic Information

Item Value
RNA id XM_007257572.2
length 1489
RNA type mRNA
GC content 0.48
exon number 4
gene id cln8
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7986161 ~ 7996819 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGATGTCATATGAAAACACTGTAAGCGGCGAAACAGAGGAGTCGATGTGAAGGAATGGAGCAGAATTACTCTTCTTAAAAACAGGTGGTGGATTTGTCACCTATGGGATATTCCATTAATGCCCAATTGAATAAATACCCAGACTGGTCAGGGCAGAATGATGGCTTCCCAGCCCACTATCGAAAATACTATGGAGCTTCCCAGCAGCATCTTCAACCTGGACTACTCCTCCAGGGAGCTGCAACTGAAGGTCATCGGCCTGGGCTTCCTTTTCTACagcctcttcttcctcttctctcacATCCTGTCTACCACACTCTCCCTCACGTATCGGTCTTTACCTGCTAAAGAAAAGGTGTTCTGGGACCTGGCGGCCACGCGAGCGATGTTCGGAGTACAGAGCGCAGTAGCAGGTCTGCGGGCGCTCATTGAAGACGGCCCCGTATTTGATGAGAAGGTGACCGGCCAAACGGGATGGTCATGGTTCAACGTGCTGACGGCAGTGAGCTTCTTCCTGTTTGAGAATGTGGCGCTACACAGCTCCAGCGTGGCCTTCCGCTCCTTTGACCTGCCTCTGGCTGTCCACCATGCCTTTGCACTGGCTGGATTTGCTGGGGCTGTGGTGTGGGAGCATGTGGGCCACTTCCTGCCTATGGTCACCTTGCTGCTGGAGATGAGCACACCGTTTACCTGCATCTCCTGGATGCTGCTCaagGCTGGCTGGGCTCGAACGCTGTTCTGGAAGGCTAACCAGTGGCTCATGATCCACATGTTTCACTGCCGGATGGTGCTGACCTACTACATGTGGTGGGTGAGCTGGAGCCACTGGACCGACCTGAGTATTCACATACCTCTGCCTCAGCTGCTGGTCTTCTTCTCAGGCCTCGCCCTCCTCACCTTCCTCATTAACCCCATATGGACACACAAGAAGACCATGCAGCTGCTCAACCCCGTGGACTGGAATTTTGCCAACAAGCCGACCTCAGAGAACGGGCCCAGAGAGGAGAAAGCGCACTCCAGCTGATGGTGAAAGGGGGTTAGGTGAAAGTACAGATGTACCTCATTGGTTGGAGTGTAGAGTTGTGGAACAGTATGAAGCTTAAGCAATGTTTTTGGTATGGAGCTACATTTTTGATGTTGGTACTTGATATTTGAAGCAGAAGgatctatttttgttttttggcaaGATTTTAGCTACTACCTATTTTAGTATTGTGCTTAACTGACAAAGCAGATTTGAAGGAATAGTTTGGTTAGAAATCGAATTTCCACAGCCTTCTTTACTGATGCTAAATGTAGTCAAGGACCTTTTGTTGTTTGAAGAACTGTTTTGTTTAAGACCAACACAGCTTCTCTTGGTTGATTGGTGACGTATGAATGGGGCTCTGTATTGGTAAGGACAATACAGGGATTACGATTCAATTTATCACAGTATATTGTAGGGTTGTTCTTCcaatatagctctggaaaaaattaagagaccactt

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K12360 CLN8; ceroid-lipofuscinosis neuronal protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106339 lncRNA downstream 4738 7977800 ~ 7981423 (-) True G78889
TU106340 lncRNA downstream 4738 7977800 ~ 7981423 (-) False G78889
TU106333 lncRNA downstream 70949 7849753 ~ 7915212 (-) True G78885
TU106296 lncRNA downstream 218834 7758588 ~ 7767327 (-) False G78859
TU106315 lncRNA downstream 220665 7762967 ~ 7765496 (-) False G78871
TU106367 lncRNA upstream 153636 8150455 ~ 8151276 (-) True G78911
TU106399 lncRNA upstream 295443 8292262 ~ 8294085 (-) True G78940
XR_002650307.1 lncRNA upstream 382670 8379489 ~ 8415110 (-) True LOC111193182
TU106342 lncRNA upstream 431699 8428518 ~ 8432284 (-) True G78890
TU106431 lncRNA upstream 479578 8476397 ~ 8510794 (-) False LOC111193183
XM_022672469.1 mRNA downstream 18483 7931051 ~ 7967678 (-) True LOC111193126
XM_022672663.1 mRNA downstream 60202 7825663 ~ 7925959 (-) True arhgef10
XM_007257573.2 mRNA downstream 165959 7811870 ~ 7820202 (-) True kbtbd11
XM_022672661.1 mRNA downstream 227958 7747106 ~ 7758203 (-) True LOC111193181
XM_007257580.3 mRNA downstream 336286 7629780 ~ 7649875 (-) False LOC103025534
XM_022672470.1 mRNA upstream 11728 8008547 ~ 8222318 (-) True dlgap2
XM_022672666.1 mRNA upstream 513871 8510690 ~ 8517648 (-) False LOC111193183
XM_007257568.3 mRNA upstream 523256 8520075 ~ 8527936 (-) False zbtb8a
XM_007257569.3 mRNA upstream 523256 8520075 ~ 8527661 (-) True zbtb8a
XM_022672668.1 mRNA upstream 533018 8529837 ~ 8549961 (-) False gale
XR_002650306.1 other downstream 708377 7276400 ~ 7277784 (-) True LOC111193180
TU105931 other downstream 765307 7199349 ~ 7220854 (-) False LOC111193177
TU105554 other downstream 2799803 5184792 ~ 5186358 (-) True G78297
TU105293 other downstream 3779777 4045434 ~ 4206384 (-) True G78083
TU105210 other downstream 4145591 3834562 ~ 3840570 (-) True G78023
XR_002650309.1 other upstream 636056 8632875 ~ 8641745 (-) False spdya
TU106477 other upstream 654118 8650937 ~ 8654310 (-) False LOC111193185
XR_002650312.1 other upstream 1841159 9837978 ~ 9838726 (-) True LOC111193187
XR_002650315.1 other upstream 2037867 10034686 ~ 10071884 (-) False LOC103027354
TU107210 other upstream 2931821 10928640 ~ 10929596 (-) True G79582

Expression Profile