RNA id: XM_007257588.3


Basic Information

Item Value
RNA id XM_007257588.3
length 2274
RNA type mRNA
GC content 0.49
exon number 11
gene id qrsl1
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7390536 ~ 7410350 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGGGTCAGCATGGAGCAAACATGTCAGCGCCCTGTAGAGAAGTGATAGTGTAAATTTGcgagaataaaagagaataaaagccGTTTTCTGAAGTAATGCTGGGCACCACCATAAGAGAGGTTTCGCTGGCCTTGAGAGAAGGGAGGTTGTCGGCCACAGAGCTGTGTAAAAAATGCCTGAAGCGCATCAAGAAGACACACTACCTCAACTCTTTCATCACAGTCACAGAGGAGCTGGCCATGAAACAGGCACAAGAGGCTGAGCACAGGCTGCTGCGAGGTAAGCCTCATGGCCCACTGGATGGTGTTCCCTTCTCTGTTAAAGACAATTTCTGCACGGAAAACATCGAGACCACCTGTGCCTCCCATATGCTTAAagGTTATTGTCCTCCATTCAACGCCACAGTCGTGCAGAAGTTATTGGATCAGGGCGCTGTGCTCGTAGGGAAGACCAATTTAGATGAGTTTGCCATGGGGTCGGGCAGTACAGATAGTGTGTTCGGTCCAGCCCGGAACCCCTGGAGTTACACTAGCTCGTACCGTGAGCAGAGCCCGGAGCAGGATCCTGACTCTGATTGGGTGATCACCGGCGGGAGTTCTGGAGGAAGTGCGGCTGCTGTGGCATCTCTCAGCAGCTTCATGGCATTGGGGTCCGACACAGGAGGCTCCACCCGTAACCCTGGCTCGCTGTGTGGGGTGGTGGCCCTGAAACCCACCTATGGCCTGCTCTCCCGCCACGGCCTCATCCCTCTGGTCAACTCCATGGACGTCCCGGGTATTATCACCAGGAGTGTACAAGATGCAGCCACTGTGCTGGGTGTCCTCCAGGGTCGTGATGAAAAAGACTCAACTACAGTTCAGTTTCCCAACTTAGCCACCAGCCTTCCTGAGGATTTTGACATCAGAGATATTTGTGTCGGCATTCCAAAGGAATACCACGCCCCGGGTCTGTCAGCCGAGACTCTGACGCAGTGGGGGCGCGTGGCGTCCATGTTTGAGCGTGCCGGGGCAAAAGTCAGAGAGGTATCGCTTCCACATACCCAGCACTCCATCGTCTGCTACCACGTGCTCTGCTGCGCCGAGGTGGCATCCAATATGGCTCGCTTCGATGGCCTTGAGTACGGTCACCGGAGTGCAGTGGAGAGTTCGACTGAAGCGCTGTACGCCACCACACGCCATGAGGGCTTCAACCACGTGGTCCGCACACGAATCCTCTCAGGAAACTACTTCCTGTTAAAACAAAACTACGACCGTTACTTTGTAAAGGCCCAGCAGATCAGGCGTCTGATTGCAGAAGATTTTCGCCGCGTTTTCCAGTCAGGCGTTGATGTGCTTCTCACGCCCACGACGCTGAGCGACGCAGCGCGCTATTCCGACTTCATCCAGGAAGACAATCGCACACGCAGCGCCCAGGAAGACATCTTCACTCAGCCAGTCAACATGGCAGGTCTTCCTGCTGTTTCTGTACCAACAGCCCTCTCAAGTAGAGGCCTTCCCCTCGGGCTGCAGCTGATTGGACAGTCCTTCCAGGACATGAAGATGCTGACGGTGGCCTATTGGATGGAGCAGCAGCTCGGCTTCCCCATCATCCGTTTCCATGATGCGGCGGAGCGGAACACGGATGAACGGGACCAGGGGGAAGAATGCAAATTGAGGTCTTGAGtgataacagagagagagagctgtattGCTTTAATACAGATGCAAACTGAGCTCATATGTTTTTAGAGCTAATTTGCATTTGGTTTTTCACATCCTGTACAGTGTATGTCTGATATTCAGTCTGTTTGACATCATGGCTGATTTATGAAGATTAGAGTGCATACTGCTGCACACTCCCAACAATGGGAGTCAATGCCAATGAAATGCTAAAAGGCCCAATGACACGGATTGCACACAGATTGCAATGGTTTGCAAATCTCATTgacctgtattttttattaacattggaaacaaaaacacatatctGATGTTTAAAGTGATTTATTACAATTGGGTGGCATCCAAaaatttgtatatttaaaaataaaagcagtttGCATATAAATGACTGTGtttaaaaagagcattttaaagAGGCAAAGTCTTTAAACAATCTGTGAAACACATAGTGGAACATTTGCAGAAAAATGACTTTGGATTTCCCACCATCTACAACCCATAATATCATtgaatgctggtgatcttcggaCCAGTTCTAAATGAGTACTTTGTTGCAGGGCTGTGTTTACTTTTGTGTAtataaaattgaataaatatttgatcccaaaaaaa

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function
GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor molecular_function

KEGG:

id description
K02433 gatA, QRSL1; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105994 lncRNA downstream 28100 7362219 ~ 7362436 (-) True G78643
TU105993 lncRNA downstream 28381 7361774 ~ 7362155 (-) True G78642
TU105988 lncRNA downstream 44097 7343165 ~ 7346439 (-) True G78638
TU105990 lncRNA downstream 49554 7340679 ~ 7340982 (-) True G78639
TU105902 lncRNA downstream 462492 6927373 ~ 6928044 (-) True G78568
TU106303 lncRNA upstream 329666 7740016 ~ 7740593 (-) True G78861
TU106295 lncRNA upstream 334953 7745303 ~ 7746850 (-) True G78859
TU106296 lncRNA upstream 348238 7758588 ~ 7767327 (-) False G78859
TU106314 lncRNA upstream 352617 7762967 ~ 7764864 (-) True G78871
TU106315 lncRNA upstream 352617 7762967 ~ 7765496 (-) False G78871
XM_007257593.3 mRNA downstream 52757 7316546 ~ 7337779 (-) True iars2
XM_007257594.3 mRNA downstream 52758 7316546 ~ 7337778 (-) False iars2
XM_022672648.1 mRNA downstream 169783 7198909 ~ 7220753 (-) True LOC111193177
XM_022672649.1 mRNA downstream 169783 7199332 ~ 7220753 (-) False LOC111193177
XM_022672647.1 mRNA downstream 196946 7091045 ~ 7193590 (-) False LOC103026718
XM_022672652.1 mRNA upstream 24267 7434617 ~ 7545317 (-) True crybg1
XM_022672653.1 mRNA upstream 24267 7434617 ~ 7483931 (-) False crybg1
XM_022672655.1 mRNA upstream 137102 7547452 ~ 7589335 (-) True clic4
XM_022672657.1 mRNA upstream 183289 7593639 ~ 7607630 (-) False srrm1
XM_007257583.3 mRNA upstream 183289 7593639 ~ 7607630 (-) False srrm1
XR_002650306.1 other downstream 112752 7276400 ~ 7277784 (-) True LOC111193180
TU105931 other downstream 169682 7199349 ~ 7220854 (-) False LOC111193177
TU105554 other downstream 2204178 5184792 ~ 5186358 (-) True G78297
TU105293 other downstream 3184152 4045434 ~ 4206384 (-) True G78083
TU105210 other downstream 3549966 3834562 ~ 3840570 (-) True G78023
XR_002650309.1 other upstream 1222525 8632875 ~ 8641745 (-) False spdya
TU106477 other upstream 1240587 8650937 ~ 8654310 (-) False LOC111193185
XR_002650312.1 other upstream 2427628 9837978 ~ 9838726 (-) True LOC111193187
XR_002650315.1 other upstream 2624336 10034686 ~ 10071884 (-) False LOC103027354
TU107210 other upstream 3518290 10928640 ~ 10929596 (-) True G79582

Expression Profile