RNA id: XM_022672630.1


Basic Information

Item Value
RNA id XM_022672630.1
length 3454
RNA type mRNA
GC content 0.43
exon number 15
gene id togaram1
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 4666571 ~ 4678410 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTTTATTGTAACGGAGCAACAGAGGAAGAGCAGTGCAGAGAAACGGTGTCCCCTCCTCATGTTAGACCTGCAGGTCGGGAACCTGTCCGTGCTTTCAGGCTCGCAAAAGGATCTAATATACACAACAGCAGGGGCTCCCCAGCTGGGAACATGTCTGAGGGTCTGGTTGGCCAGGGTGTTTTTGGATCTATTGGCCTTCCCAGCAATTCCAGTGTAGCAGAATGGCTGGATGACACCACAAGCAAAGCCCTCCGGAACTCACCGGATGGAATGTATAGTTATACTGATTTCATCGAGAGCCCTAAAGCAGAGAAGTCAGTGGAGAGAATGAAACTGTCCAGATTTTCAAGGGACAAGATGCATCAGCAAGAAGCCCGGCTCACGCAGAATGACCAAACGGAACATCAACCCAGGACGGAAAAAACTAGGCAGCACTTACGACACACCGtgtctgaaataaactctaatGAATCAACCCCACTGAAAGATCTGCAACTGAATGGTATTTATTTACCCTCAACTAAAACTGCACTCCTCACAGATGCCTCAAATGCTACCAGTGTGCAGGAATCTCAAAATCCAGTTAAATTTAATTGCTCCGTTCCACAACATCAACCCAGCCCCCCTGCAGCTCTccctaacaaacaaacacagccaGGTCGTAGAAGGGCTGTCAGTCTGAACAGAGGGCGTCCATCTCTTTCTAACAGCTCTGAAGAATTCACACCGGGTACCCCAAAGAAGGATCCTCATGAGCAGCAAGAGCCACGTCCGTTCTCAAAACCAGACTTGGCTCTCACTCAGAGTTTTAGATTGCTCAGCTCTGATGACTGGGAGAAGAAAATCGAAGGCCTGACATTTCTGCGCAGTTTAGTCAAGTATCACTCTGATGTGCTTATTAGCAGACTTCATGATGTTTGCCTTGTTCTCATTCAAGAGGTTCGTAATCTGCGTTCTGGAGTGTCACGAATGGCTGTGGTGACTTTGGGAGAGCTGTATTCGGGTCTTCAAAAGGGAATGGATCAGGAGCTGGATGCTACAGCCAAGGCCCTCCTACACAAAGCAGGAGAATCCAGTGCCTTTATCAGGCTGGATGTGGACGCAGCACTGGACAGCATGGTGCAGAACTGCACACCCACCCGAAGCATGAGCGCCCTTCTCACCGGAGGACTTGGtcatttaaatgctGGGGTAAGAAAGTGTACTTCTCAACACCTGGCTGTTCTGGTAGAGAAGATTGGTGCTGCCCGCTTATTGTCTGGAACCAAAGACCTCACTGACCGAATCTTGCCTGCTGTTTGCAAACTGGCACAGGATTCCTCCCAAGAAACCAGATACCATGGTCGCAAGATGCTGCTGTTATTGTCATCTCACCGCGACTTTGATAAAATGTTGATAAAATACATTCCAGACAAAGACCTGGCAACCATTCGGGACACGGTACTCACTCTAAAAACCAAGGGACTGGGTGAGATGCATCATGATACTCCTTCAGCTCGGGGCAGGCACTCCCTCTCTGGCGGTGGACTGGAGCATGTTTCATCGCTCACCCGTGACTCTCAACATGCCCACAGTAAAGACAAAGCACAGATCCACAGCATCGCAGATAAGACAGAATACATCAAGCAGCTTAAGGCTCTGATGGGTTCAAAAGATTTCCGGGAGCGCATCAAGGGCATCAGTCAGCTGGTCACAGACTGTGAGGACAACCCGTATCTGGTCATTGGAAACATGTTTCCGGTATTTGATGCGTTTAAATCACGACTGCTGGAGTCAAATAGCAAGGTCAACCTCTATGCTTTGGAGGCCTTACAGAAGATAATCAAACTGCTCAATGACCACTTGTCCCAAGTGGTCTTCATCCTTGTCCCTGCTATAGTGGACAATCACCTCAACTCGAAGAATGATGCCATTTACATGGCTGCAATAGGTGCCACCGAAGCACTCATTAGTAATCTTGACAGCACACTTCTTCTTCAACCTTTTTGCACAAAGGCTCAGTTTCTGAGTGGGAAAGCTAAAGTGGTTCTTGTTGATAAAGTCACAGaGCTGGCGAAGGAACTGTACCCAAGAAAACCACAGCTAGTAGAGCAGAAAGTGCTGCCTCTACTTTGGCACCTGCTTGGGACTTCGGGCAACAGTGGTACTATCCATGGGAGGAGTGGTAGTGTGAGAGGGGCCACCAACAACCTGTGTCAAGCCCTTCACCTACACATGGGTCCAGCTTTGCTTGATTGTGCTTCCTCTCAACCTTCCAATATCCACCAGAGTCTGAATGACATTCTTAAGAACTTTTCAACCTCTTGAGATCACCTTCACAACTACACTCAACAAACTTTGTTACACTTTAACCAACCATTTATTCTACTTGAAGACAGATGTCCTTGCCTTTCCTTCAGTGCCTGTACTGTTTATCAGTTAAATAAACCCTGGAATTTAGCATTCAAATTTTTAGACCAAAACTAATCCTTCTTTAAAAGAAATCATGTGTTGTGCTCATGTATTGGGCTCAATGGCAAATAATCTTAATCACAGTGCctgtactttaaaaataataataataatatactaaagaATTCAGTTTTAATACGTTGAATTAGAAAACTATAAGAAGTCCTTCACTaatgaagaaaataatttaGCTTTAAATCAGGTTTAACACTCCTAAGAGCGCTCCTACTGTTGCACTTTGAAATATTAACACTATCATGATCATTTTTCATGGGAATATAGTCTATATTGTCCTGtgattgtgattattattgttacattttggttgcgtattttttaaatgctgacaTATCCTAAGGAAACCATGCagaatgtaattttttaaatgcgCAATAGAAAAGGATGTAtaatctgtttttgtttgtttgtttgtgatgtGACTTTTATATGTGGTGTCCTGCATTGTTGTTCTAAACTTTAGTGCAGGTAAATGTTATTTACAAATACTATACTTTGATACTGTGTTTAACTCATGAGTGTAGTGGCACAGTATTTGCTTAATATGTGATGTTTATTGTTGCAGTATATAATGCCTCTTATTTTGTGCACGgatgaacacttaaaaataattttagcgTTTGTTACAGTTGGGAACTGTCCTACTACCTTTGCATGAACAAATTTATTGGTGGAGTGACCAGAATATATTTGTGCATATATTTGTTGATGTTCACAGATGCCTATATGAACTTTGGATGTGAAAGAGCTGTATTTTTGGTGAAACGTAGAAGATACAATGATAAAAGCTGGCTTTGAAAAGAAATTGTATATTTATAGGTTACACATGAATTTATTCCCAGATCTGTAATTTGTATTCAGTATAGTGCCAGTCTCAAATAGATTTTCTGCATATCTGGTGTTAAATTACATGGAATATGTTTCTCAGCAGTGTAAGACCTAGTGTAAGATGgatctatataataaaatgttttatttctgtaa

Function

GO: NA

KEGG:

id description
K24886 TOGARAM; TOG array regulator of axonemal microtubules protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105516 lncRNA downstream 18588 4610006 ~ 4647983 (-) True G78266
TU105515 lncRNA downstream 57422 4607908 ~ 4609149 (-) True G78265
TU105483 lncRNA downstream 148261 4438587 ~ 4518310 (-) True G78241
TU105371 lncRNA downstream 335956 4329092 ~ 4330615 (-) True G78143
TU105367 lncRNA downstream 338923 4326980 ~ 4327648 (-) True G78140
TU105532 lncRNA upstream 498665 5177075 ~ 5178793 (-) True G78279
TU105553 lncRNA upstream 510598 5189008 ~ 5204565 (-) True G78296
TU105552 lncRNA upstream 523685 5202095 ~ 5204565 (-) False G78296
TU105560 lncRNA upstream 526237 5204647 ~ 5204974 (-) True G78302
TU105555 lncRNA upstream 526676 5205086 ~ 5207646 (-) True G78298
XM_022672629.1 mRNA downstream 1084 4626434 ~ 4665487 (-) True fancm
XM_022672628.1 mRNA downstream 1085 4624101 ~ 4665486 (-) False fancm
XM_022672627.1 mRNA downstream 1085 4624101 ~ 4665486 (-) False fancm
XM_022672464.1 mRNA downstream 49777 4613712 ~ 4616794 (-) True slc25a47
XM_022672625.1 mRNA downstream 68915 4591368 ~ 4597656 (-) True wdr25
XM_007258927.3 mRNA upstream 532319 5210729 ~ 5262996 (-) True luzp1
XM_007230052.3 mRNA upstream 2010894 6689304 ~ 6707961 (-) True LOC103024242
XM_022672638.1 mRNA upstream 2010894 6689304 ~ 6695275 (-) False LOC103024242
XM_007230053.3 mRNA upstream 2035046 6713456 ~ 6722276 (-) True LOC103024548
XM_022672639.1 mRNA upstream 2070708 6749118 ~ 6768199 (-) True nphp1
TU105293 other downstream 460187 4045434 ~ 4206384 (-) True G78083
TU105210 other downstream 826001 3834562 ~ 3840570 (-) True G78023
TU105108 other downstream 952294 3691607 ~ 3714277 (-) False prkd1
XR_002650301.1 other downstream 1027656 3633094 ~ 3638915 (-) True LOC111193170
TU105040 other downstream 1317582 3297582 ~ 3348989 (-) True G77892
TU105554 other upstream 506382 5184792 ~ 5186358 (-) True G78297
TU105931 other upstream 2520939 7199349 ~ 7220854 (-) False LOC111193177
XR_002650306.1 other upstream 2597990 7276400 ~ 7277784 (-) True LOC111193180
XR_002650309.1 other upstream 3954465 8632875 ~ 8641745 (-) False spdya
TU106477 other upstream 3972527 8650937 ~ 8654310 (-) False LOC111193185

Expression Profile