RNA id: XM_022672663.1


Basic Information

Item Value
RNA id XM_022672663.1
length 5378
RNA type mRNA
GC content 0.48
exon number 25
gene id arhgef10
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7825663 ~ 7925959 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgctgaggaAGTGCTCCTCCGACTGGGCTTTCCTCCAGAGCGTTCGTATCCGCTCACTTCTGACTGCTTCACCTTCAACCAACACAAACACGCTCACGCCGCTGTTATCTGATCCGTGCACACTCGAGATCTGAGCGCTTGTGCGTTTGTATTTCAGATCCAGATGAAGTTATTTATGACGATGTGCCGAGAGAGAATTCTGGATCCACTACAGacccCGATGAAATGATCTACGATGACGTGGAGTTGGGGGAGGAGGGTGGCAGCAGTTCTCTGGATAACGGCTGGAGCTCCAGTGAGTTTGAGAGCTATGACGAGGGCagtgatgctgagaacggtcacgCTGAGAACGGCCTCCCCAGCGCCTTTGTCCGCGGACGCCCACCGAACAAGAAAACACAcCTCTCTCAAGATCTGACGCGTTTGAAAGAGCACTATGAGAAAAAGGTGAGAGATCTAATGGCAAACGCAGTGGGGACAGTAGAACTCCAGCAGCTCAGACACAAACATGAGCAGAAGATGCAAAAGCTGGTGAAGGCAGCTAAGCACGGGACCAAGGACGGCCTGGAGAAAACCAAAGCTGCAGTGAAGAAGGGCAAGTCCTTCATTCGGACCAAGTCTTTCTGCCAAGAGAGGAAGATGTCCCATTTTGAGGAAGAAGAGTCTGAGCTCTTTATCGAGGTGGAGTGTTTTAATGTGGAACCAGTGTTAGGCCCCGCCCCCGAGGGCCTCTCTCAGCAACAGGTGGTCAGAAGATGCATTCTGGAATCAATATTAGAAAGTGAGAAGAACTACTTGGAGGCACTGAAGAGAATACTTGAGCAGTATGAAAAGCCTCTGCTGGAGATCGAGCCGCGGATgctgagtgagagaaagtgtaaGATGGTGTTTTATCGCGTGAGGGAGATCCTGCAGTGTCACGCCCTCTTCCAGATCGCTCTGGCCAGCCGAGTGGCAGACTGGGACAATCTGCAGACCATCGGAGACGTGTTTGTAGCCTCGTTCTCCAAGTCCATGGTGCTTGATGCCTacagtgaatatgtgaataacTTCAGCACAGCCATGCAGGTGGTGAAGAAAGCCTGTGCATCTAAACCCTGCTTCCTGGACTTCCTTAAgCAAAGGCAGGAGTGCAGCCGTGACCGGGTCACTCTCTATGGTCTCATGATGAAACCTATTCAGAGATTCCCCCAGTTTATACTACTTctacagGACATGCTGAAGAACACTCCGGTGGGTCATGCTGATCGGCTGCCCCTGCAGATGGCTCTCACTGAGCTGGAGACTCTGGCTGAGAAACtcaatgaaaagagagaagctgATCAGCGCTGTGAGATCAGACACATCGCCAAGGCCATGAATGAGCGCTACCTCAACAAGCTCCTGAGCAGCGGCTCCAGGTATCTGATCCGCTCTGATGATGTGGTCGAGACGGTGTATAACGACCGCGGTGAAATCATCAAGACCAAAGAGCGACGACTGTTCCTACTCAACGACGTGCTCATGTGTGCCACGCCCAACCTGCGATCTCCTCAGGAAGTTGTAGGTGGTGTTATAAGTGGAGGACTTCCTTCAGGCCAGCACTTTCTGTTGAAATGGAGCGTTCCTCTGAGCCTGGTGGAGCTGGTGGAGTTCGGCTCCTCGGAAGAGATCGGAGACTCTGCCCGATTCCCGGCTCCTCACTCTGGAGACAAAGTTGTCATCAACGCCAAGCCAAATAAGTTATATGTGGGTCCAGGCCAGCTTTATCAGGACCTGCAGAACCTGATCCACGATCTCGGCCTCGTCAATCAAATCTCCTCCATGATCGGCAGCCTCAAGGGAAACTACCAGaaTGTAAATGGGACAGTAGCACAAGACTGGGTCTCAGGTCTTCAGCGTCTCATCCTTAAGAAAGAAGAGGAGATCAGGGCTGCAGACCGCTGCCGTATCCAACTACAGTTACCGGGGAAACAGGACAAGTCAGGCAGACCCACATTCTTCACTGCGGTTTTCAACACGTTCAGCCCTTCCATCAAGCAAGCGTGGATCAGTAACCTGCAGATGGCCAAGCTGGCCCTGGAGGAGGATAACCTGCAGGGCTGGTTCTTTGCTGAAGATGATAGTAACCAGATAAAGAAACAGAAGCATCCTCTCCTCCTAAAGCACATGCCTGTGGTCATGTCCAGACTGCAGGAGTTTAAGgTGGAATGTGCAGTTCATAACCCAGAGCCACATATTAACAGTGAAAGCACAGCGGACATGCCTGCCGTGGGTCACGGATGTGTCTGGGTGGCCAGCTGCACCAATCAGATGGGTCAGATTGCCATTGTGGCCATGCAGAACTCCAGTCCGAAGGTGACCGAGTGCTTTAACGTGGAGTCACGAATTCTGTGTATGACCTATGTGCCCATGGATGAGTCCCTGGTGGACGGCGAGGGAAACGCAGATCACGGGGCCCAGTCCAGGGTTGGTGATACACCCACGGTGTGTGTAGGGATGGAGGAAGGGagTATCTCTGTCTATAAGAGCAGTCAGCGCTCGAAGAAAGTCCGTCTGCAGCACTTCTTCTCTCCGGACAAGTCCACAGTCACGTGTTTGGCCTACAAGAGCCCATTTCTGTACGCTGGGCTGGTCAGCGGCTCTCTTGCAGTGTACTCCAGAGCATCAGacGGCCTATGGGATCCATCCAGTGTACAGTTGCTGAAGCTCGGGGTTCTGCCGGTGAAGGCTCTGCTGGCTGTAGGGGAGCATGTGTGGGCATCTTCTGGAGGCCAGGTCTTTATCAtcaacaccaacacacactctgtgGAGCACCAGTTGGAGGCTCATCAGGATGAGGGTATGGTGGTATCTCAGATGGTGGTGGCTGGAGTGGGCATCTGGATCGCCTTCAGCTCTGGCTCTACACTCAGACTCTTCCATACTGAGACACTGGAACACCTACAGGACATCAACATCGCCACACCCGTCAACAACATCTTATCAggTCACCAAAGGGTCTCAGTGAGCAGTCTGCTGGTTTGTCACGGTTTGCTGCTGGTGGGGACGAATCTTGGTGTGACCGTGGCTCTGTCTGTGCCCAGGCTGCAGGGAATCCCGAAGGTCACAGGGCGAGGCATGGTGTCCTTCCACGCTCATTATGGTCCTGTGAAGTTCCTCACTGCAGCCCTGCCTGTGTGTAACCTGCCCCAAACCACCACAGCTCCAACTGCCCTCAGTTCATCCAGCCAGTGTGGTCCTCCAGAAGAGGAAAGGCCAGgctctgctccagcagtgtccAGTGACAGAGGCGTGTGGCTGggcgacagcagcagcagctgcaccCCCGGCCCTTGCTCTGGCTCAGCTCCAGTCCTCCAGGACACGCTCTCCTCCTCCTGCGGCtctctggccacgtcacacagCTCTCTGGAGCACGGCCCGGAGGACGGGAGCATCTACGACCTTCTGAACGACCCTGCACAATCCCAGAAGGCCAAGCGAGCGCAGCGGGTGGACGTGAGCTCGATAATGGTGGTGTCTGGTGGGTTGGGGCACCGTCGGGTCAACAGGAAGACCAAACAGTCCAGACACGAGGAGAGTGTGTCCACCATCATGGTGTGGCAGATTCCTATACTTAACGCATGAGTCTGAAGATGGAGATAAAGGTTGGTGATTTAATGCATTACTTAGGGCATGACTGATGGGCTCTCTGTCCCTTGCAGTGCATTTGGAGGCATTTTCCTGGTCTGTGGTGTAGAAAGGGTTGATGCTGAATGAAAGGGAAACAGTGCTACAAGGTGGGACTGAATACACAGTTTTAATCGATGCTCATTCTCCAGTGCTGCCGGCAGCAGTGACATCAGCAGTATAGCCACTTACGCTCTCGTTGGAAGTTGGACCCCTTCAAGTTACTTGAAATACAAACTGCTTTTGATGGCAATTGGAAGTTGGACAGAGGAAGTGCTGCAGTATGACTCCAGTAattgtgctttttttaagtgtaaaagCAGTCTGAAGTGAAGTagcactgctaatgctaattatcCCTATGCATCTCCAGCTGCTGCATGCATGCCATGCTGTGTGTTTACCTTGAAATCAAATTCAAGGTAACTCCACTGCATTATGAGTTCTGAAAGATGTGTTACTCAGTATATTGTAAGGGATGTTTACAGGACacacttattaaaaataaaggtgctatgAAAGACTATTTAAGGAATGCCATAGCAGAACAATTTGTGGGGAGCTTTGAGTGTAAATTTTATGAAATAGGTAAACCTTTACAAAAGCTCTTTTACATATACGATGCATCTCAGTTGGATATGACACACTAACACAATAAggtatttactgtatactttTTTGGTAGGTATTTGTAGTGCAGGTTTGACAGGTTAATACgcaaaatattaatgtaataaccAGTTTTGTACGAAGAATAGCTTTTTCTATTCCAACATACAGCACTGCAAGTTCTTCAGTGCAACTAAAGTGCAGCTAAACATGCATTATCATCTTATTGTTATTAATACAAAATTATTATGCATCATAATAATTAAGTATACTCAGTTTTGACACTTTATCTATGCTACATACTACAAATTACATACTCAAAAgtttgttaatatttataattagtGTGCAATTTGTGCATTAACTCACCCATTCAACTCTTACAGGTTCTTACAAGTTATTCTATGGCATcgattaaataacttttaatagtACCTTCATTTTTTTGAGTGTAGATCTGTCACGTTCTTCTTGGTAGATTTGTTTGCCCAAAGATTCAGACTTCAAAACTTTAAGACTAGAGCTTCCAAGATCAAGACGTACCAGCTCTAGTTTCACCTTTACATACAAAACCAAAAAGCTGTCTGATATTTTCTGTTAGGAAGGACGTGTCTGGAATATCTGGCTGGCCAGATATAGAATATTCCTTTTGTTCCTGAAAATGAGTGGAGTTATACCAGTCCTATCAGACATTCCTAAATTAATTTAGTCACGTATGGGTATTTAATATGACTGAGAGAGCTTTATAAGGATGCCATTCAGTATATATGTCTCTTCTGTCTTTTAACAAATATTGAAATAGTTTTGTcccactttttgttttcttgtgtttttcttgTATTTGTCTGATAACTAATGTCTCATAATCATGCTTTTCTTACCTGCACCAAAACTGTAACACGTTTGTTTTTagatttgtttcttttatttgcaccattatttgtattattttagcaTCATGCACATACATCTCTTGTCAAATCATGAAACCTGAAGGGATCTAAGGTGATTTCTGTTACCCTGAGGCCTTAAACAAGGATTAAAAAGGTGATATAGGAGGTTGTGTAAAACCAAAAAAGTGGGGAAAtgtgaataatattaaataatttcccTCTGA

Function

GO:      GO:0005089,GO:0032319

KEGG:

id description
K16727 ARHGEF10; Rho guanine nucleotide exchange factor 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106296 lncRNA downstream 58336 7758588 ~ 7767327 (-) False G78859
TU106315 lncRNA downstream 60167 7762967 ~ 7765496 (-) False G78871
TU106314 lncRNA downstream 60799 7762967 ~ 7764864 (-) True G78871
TU106295 lncRNA downstream 78813 7745303 ~ 7746850 (-) True G78859
TU106303 lncRNA downstream 85070 7740016 ~ 7740593 (-) True G78861
TU106339 lncRNA upstream 51841 7977800 ~ 7981423 (-) True G78889
TU106340 lncRNA upstream 51841 7977800 ~ 7981423 (-) False G78889
TU106343 lncRNA upstream 56011 7981970 ~ 8040192 (-) True G78891
TU106367 lncRNA upstream 224496 8150455 ~ 8151276 (-) True G78911
TU106399 lncRNA upstream 366303 8292262 ~ 8294085 (-) True G78940
XM_007257573.2 mRNA downstream 5461 7811870 ~ 7820202 (-) True kbtbd11
XM_022672661.1 mRNA downstream 67460 7747106 ~ 7758203 (-) True LOC111193181
XM_007257580.3 mRNA downstream 175788 7629780 ~ 7649875 (-) False LOC103025534
XM_007257579.3 mRNA downstream 175788 7629780 ~ 7649875 (-) True LOC103025534
XM_007257581.3 mRNA downstream 201203 7609633 ~ 7624460 (-) True LOC103026256
XM_022672469.1 mRNA upstream 5092 7931051 ~ 7967678 (-) True LOC111193126
XM_007257572.2 mRNA upstream 60202 7986161 ~ 7996819 (-) True cln8
XM_022672470.1 mRNA upstream 82588 8008547 ~ 8222318 (-) True dlgap2
XM_022672666.1 mRNA upstream 584731 8510690 ~ 8517648 (-) False LOC111193183
XM_007257568.3 mRNA upstream 594116 8520075 ~ 8527936 (-) False zbtb8a
XR_002650306.1 other downstream 547879 7276400 ~ 7277784 (-) True LOC111193180
TU105931 other downstream 604809 7199349 ~ 7220854 (-) False LOC111193177
TU105554 other downstream 2639305 5184792 ~ 5186358 (-) True G78297
TU105293 other downstream 3619279 4045434 ~ 4206384 (-) True G78083
TU105210 other downstream 3985093 3834562 ~ 3840570 (-) True G78023
XR_002650309.1 other upstream 706916 8632875 ~ 8641745 (-) False spdya
TU106477 other upstream 724978 8650937 ~ 8654310 (-) False LOC111193185
XR_002650312.1 other upstream 1912019 9837978 ~ 9838726 (-) True LOC111193187
XR_002650315.1 other upstream 2108727 10034686 ~ 10071884 (-) False LOC103027354
TU107210 other upstream 3002681 10928640 ~ 10929596 (-) True G79582

Expression Profile