RNA id: XR_002650316.1


Basic Information

Item Value
RNA id XR_002650316.1
length 3267
lncRNA type intronic
GC content 0.36
exon number 2
gene id LOC111193189
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 10137983 ~ 10141355 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtaagaatgagcgagagagatacagtaagaaaaagacagaggtATAATAagtgaaagaatgagagagaattaGAGTTATAATGGAGATAGATACAATAAAGAGAAGACAAAGAATGAGCAAGAGAGACATTACAAAAGTATATACGATAAGAATacggagagaaagaatgagagtgagagatacagtaagaaaaggagagagaaagaaagaacaagacaTGCAGTATTAAGGGAGAGCTGCATTAATATTAGGAATGATACGAGAGATATAGTAAAAAATTGAGAAACAAAAAAGTACAGAGGAAGAAGGAGCCTGACGTCTCACCAAGGTTTGTGTCTTTGCTGCATTGTATGTATTTGGTCCGGGTAGTTTTGGTTCCACACTGCACTAGAGTTTACTACATCCTCTTGTCATCGTTAGCAATGTGAGCTGCGTCTCTCTATACTTTATATGAATTGGTTGTTAGAATGTTGGTTATGAGTTTGATGAGTTGCTTTGCCAGGTGTTGACAAATTTTAGCTCTGTGTCAGAATCCGACTTCTGTTTGTGTATGCCCCCGTCCCGCAACAGAATGAGAGTGAAAGATTctcctcagattccttttatttctctttataaataggggttaatctactgttacagtaaataaattaattctctGTGTAAGCAGATGTGTCCATACTGCTGCGTGATGCACCTTCACGCCAAAGAGAGTCAGATTTAagcacaacaccagttctttttctaACTGGTTTGATTAAAAAGTTTCTCAACTTCCCCTAATTGATCTGAAAgtctgaaaaatgtttttacactgcAGGTGAATTGGACCATAATTGAGTAGACAAACACCTCCTTAGGTCAGATTAAACTCCTTTAGTCCAGGCTGTGGTTTGGTTCAAACCCAAACTGAAAAATACCTagaagaaagagaatgaaacAAAGAATGAATGAGCAACATGCAGTAAGAAAGAGAATAGGTACAATAAGAATAAGAAGAGAAAAACATGAGAGATACAGTAAATATGAGCAAGAGCTATCCTAAATGTGAGTAAATATAAGCGatagacagtaaaaaaaaaaagtagagcgCAAATATGAATGAAAGAGATTCAGAAAGAATGAACTACAGAAATACACTGAGAAATAAGCGAAAAAATgggcaagagagagataaagaatgagagagagatacagttaGGTCcagaaatatttggacagtgacacaatcttTATAATTTGGATTCTGCATGCAAACAAACTGGATTTGAAATGAAACAAATTAGTTGAAACGTAAGGGTAGACATTCAGATTTCATTCAAATGGTTAATTAAAAATATCCTATGAATCGTTTTgggctcaaaagtaattggacaaatgATCTCAAAAGCTATTTTATAAGATTCTTGGGCTATTATCTTATTTATCTGCCACCAGTTAAACAGGTAACAGGTCTTAAGCTGATTCCAGGTGTGGCATTTCCATTTGGAGGCTCTAACCCCTGCTGTTAACCCCATAACATGCGGTTAAAGAAACTATTTATATAAGAGAAACAGACCATCATTaacctgaaaaaagaagaattttatcAGGGAGGTAGCAGAGAAGTTAGGAGTGGCCAAATCAACAGTTAGGTGCAGTCTAGGGAAAAAGAAGGCAGTGGTGAGCTTGAGAACTCCAAAAGCCCTGGACGTCCACAGAAATCAACAGTGGGAGATGATTACAGAATCCTTTCCACGCTGAAGAAAAAACCCTTCACAACATCCACCCAAATAAAGAACACTCTTTAGATAGTGGGTGTGTCATTATCTCAGACTACCATAAAAGGAAGACTTTGAGAGCAATACAAAGGGTTCAACACAAggtaaaaaatcattaataaaaagGACAGGGGAATAAGATCAACATGTACCAGAATGATGGGAAAAATAAAGTATGGAGAAAGCCCAGAACAGCTTGTCACAAAGCTCACACATTCTCAGTAAAACATGATGGTGGTGGTATAGGTTTGAATGGCTTCCAGGGGCACTGGGTCACTAGTGTTTATTGATGATGTGACAGAAGACAGAAGTAGAAGAATGAATTCTGAATGGTACAGGGATTTACGCATCAAGGTTGATTGGACAGTGCTGAACAGTATGAACAGTGGCCAAGAACTTACAAAAAAGTAACGCAGGAGTTTTTGTAAGATACAGAAGTGTAATATTCTACAGTAGCAGAGTAAATTACCAGATCCGAACACAATCCAGCAGCATTTTACTAAAGGCTGAAAGGCAGAAAGACACTCAAAAACCAGAGACAACTGAAGACAGCTACAGTAAAGATCTGGCAAAGCATCAATAGGAGGTAACCCAGAGTTTAGTGATGCCCATGGGTTCCAGAATACAGGCAGTCATTGCCTGCAAATGATTttcaactaaatattaaaaatacacttttgtgATAGTTTATTTGTGCAATTACTTTGAGCTCCTGAAATGAAGAGGCTTTGTAGTAAAATGGTTGATTCCTAAAAGCTTTATAGGATAATTTTGTTCATCCTCTTGAATTAAATCTGAAAGTTTACAGTACACTTCAACTACATATAATTTGTTTCATGTTAAATCCAGTTTGGTGGCATCCTGAGCACAACGAAGaagattgtgtcactgtccaaatatttatggaccCAACTGCACAAGAGCATtaggagagagagtaagaaaaatatacagaaaggAAGAGGAAAGATAATGAGAGattaaaggagagagagaagtgtaaattaaataacactgtGTATACCACACTGCCATCCTGTGGCCAAATCTTAGAACTGCACCTCACTGTTTCCTACAGAGACAAAACCTTAATGTTTTCTGTAAAATTATTTTCCATTTATATTTCTCACATGCTGACACTAAAAACTGCAGTAATCTATTATCTGTGTTTGTTACTGGTTGTACAGTACAAAGTTCATAGCTTGAAAACAATTAATACccattttacttactttttcactttaactttaatattaaaaatgaaaaagaaaaaaaaaacaaaatggcatAATAGGCCTACAATGCAGCACTGCTTCCCCTTAAGGATGGGCCTTTAGACCACTAAAATGTTAATTGCACAAAACAACTAAACCAGTGTTTCCACatgtccttaaaaagtcttaaaagtgtcttaaaatatgggtaattaaggtcttaaattgtcttaaatttactgtaaatttgctgtaggtatcaCATTTTCAGATGGTGCATTTAATGCCGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106848 lncRNA downstream 23821 10108804 ~ 10114162 (-) False G79290
TU106841 lncRNA downstream 25416 10111222 ~ 10112567 (-) True G79290
TU106838 lncRNA downstream 32302 10105423 ~ 10105681 (-) True G79288
TU106835 lncRNA downstream 36237 10101536 ~ 10101746 (-) True G79285
TU106818 lncRNA downstream 137165 9998895 ~ 10000818 (-) True G79269
TU106921 lncRNA upstream 118247 10259602 ~ 10259882 (-) True G79347
TU106930 lncRNA upstream 153159 10294514 ~ 10295224 (-) False LOC103027264
TU106931 lncRNA upstream 159714 10301069 ~ 10301293 (-) True G79357
TU106932 lncRNA upstream 163038 10304393 ~ 10336716 (-) False LOC103027264
TU106933 lncRNA upstream 194455 10335810 ~ 10336716 (-) False LOC103027264
XM_007239178.2 mRNA downstream 50943 10084208 ~ 10087040 (-) True id3
XM_015603021.2 mRNA downstream 66099 10054767 ~ 10071884 (-) False LOC103027354
XM_007239179.3 mRNA downstream 66099 10054767 ~ 10071884 (-) True LOC103027354
XM_022672471.1 mRNA downstream 96918 10040341 ~ 10041065 (-) True LOC111193127
XM_022672686.1 mRNA downstream 114376 9987389 ~ 10023607 (-) False LOC103045212
XM_022672687.1 mRNA upstream 63780 10205135 ~ 10222403 (-) True ythdf2
XM_022672472.1 mRNA upstream 153133 10294488 ~ 10307595 (-) True LOC103027264
XM_022672689.1 mRNA upstream 287030 10428385 ~ 10475469 (-) True LOC103026970
XM_022672690.1 mRNA upstream 287030 10428385 ~ 10475468 (-) False LOC103026970
XM_022672691.1 mRNA upstream 336307 10477662 ~ 10488854 (-) True LOC103026375
XR_002650315.1 other downstream 66099 10034686 ~ 10071884 (-) False LOC103027354
XR_002650312.1 other downstream 299257 9837978 ~ 9838726 (-) True LOC111193187
TU106477 other downstream 1483673 8650937 ~ 8654310 (-) False LOC111193185
XR_002650309.1 other downstream 1496238 8632875 ~ 8641745 (-) False spdya
XR_002650306.1 other downstream 2860199 7276400 ~ 7277784 (-) True LOC111193180
TU107210 other upstream 787285 10928640 ~ 10929596 (-) True G79582
TU107214 other upstream 955812 11097167 ~ 11183929 (-) False ltbp1
TU107221 other upstream 955812 11097167 ~ 11183839 (-) False ltbp1
TU107228 other upstream 955812 11097167 ~ 11183839 (-) False ltbp1
TU107591 other upstream 1828609 11969964 ~ 11971939 (-) True G79865

Expression Profile