RNA id: TU143505


Basic Information

Item Value
RNA id TU143505
length 3266
RNA type TUCP
GC content 0.39
exon number 6
gene id LOC111193563
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 25361744 ~ 25369439 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTCTGTCATCTTGGTGAAAAGACGTGTGAAACTTTGGGATCAGTTGAaaaactcctccctgaaagatctggacctcagtaacaatgatCTGCAGGACttaggagtggagctgctctctgctggactaaagagttcacactgtaaactgcagacaCTTGGGGTGGAACATGGAGGGAAAATCAGAATCAAACCAGGatttaagaaatATGGCTGTGATTTTACACTGGATCCAAACACAGTACACCCTAGTCTAGGGTGACCTACTGAGGACACCCTAGTGAGGACAACAGGACGGTGATGAGAGGAGAGAAGCTGCAGTCGtatcctgatcatccagagagatttgatAAGTGGGAGCAGGTTCTGAGTAGAGAGAGTGTTACTGGGcgctgttactgggaggctgaGTGGAGCGGCAGAGGAGTTTTTGTATCTGTAagttataaaaccatcagcaggACAGGAGAAGAATCAAACTGTCGGTTTGGAGGAAATATAAACTCCTGGTGTCTGAGCTGCTctgattacagttactctgttcATCACAATCTGAACTACACTAAACTCCGCCCTCCTCCCTCTGGCTGTAGGAAaataggagtgtatgtggactgtccTGCCGGCATTCTGTCCTTCTACGGCGTCtcctctaatacacacacacttatacacattcAGCACCACCTTTACTCAGCCCCTCTATGCATGATTCACTATTCATGAAGACTCctcagtgtctgtgtgtgagataGATTAACCTTCCCTCTGTTTGTGAGCGTGAGTATGAGAGAGTATGAGTAAGTAGGACTGTAAGTGTGAGTATGAGTGTAGTGATGTCAGGGCCCTGGTCATATCACCACCTACTCAAAACACTTGAGAACATAAAACACAGACATTGATAAGATTGACATAGTACTTACCTGGTTCCTGAAGGAATGGCAGCGCACGAGCCACCAAGGTTCTTAAGGACTTGGTAGAGAACAAGGGtctgaaaaaaagaggaaaacaatgtaaaaacatcTGAACATTGCATAATATACTTTCCTAAAAGTCCAAAGTGTTGCATGCATGTATTCtattatgtaaataatttaaaataactcTTGCCCACCTGCTTGCAATGTAATTATCTAATGGTTTAATATGGGGTGGGCTATTTGAGTATTTAAGAGCAGGTGGGCACGCTAAAGGGGGTTTCTCTAGATTAAGCATGACTTTATGCCGATAGGAAATTGTTGGATTGGGAGCACTTTGAGCAAGTTGCTCAAGTGTCGAGAAGGTGGTAGCTACAGTGCCACTGTAGCAGATAGCTTGGAAAACaattcttcctctctctgtctattttgCCTTTGTCTTCCTCACAGAGTTGAGGAATGCCAAGTAATTTCCCTTCACCTCAATGTGAAGAACTTCAAAAAAGTAACCGATCAATGGCCAATCCAGTTTACAGCCCATTTTTCTGGGCCAGGTTTAAAACTAACCATAGTATTAACACTCTATGTCAGCAATTGAGTTTTTCAAAACAACAATCATAAAAGCATTATGGATAGAATGTTTACTTCTCTTCCACCCAATTGAGACTAGATAAGACTCCATAAAAGCACCAtaaaatttacacacacacacaaacccttcAAACCACAAACACTCTGTGACCCTTCAATGAAATTATCAAACTGTTAGAAATGTGATGTGCAACTCTGTCGGAAAGGAACTTTCTTGGAGCAGTACTCTTCACAACAATGTTTTGTATTGCTCTTAATTTTCCACGAATCAAGACACATTCCAGTGTTTTGAAGGACTTGTAATCAAATCGTAATCCTAAGGCTTTTCCTTTTTAGGATATGCACTGATATGCAACTTAATGTGTAAGGTGATTGGGCCTTAGTGTAATGCCACAAACTCAGGGAACATATCATAATCTTAGGATCAACATGCCATTAGGGGGCACACCTCAAATAAGAAACTGGGACACAGCAGTTTAGTGCAATTTGTTTTCGGGAAGCAGTGGAGATGTCACTTTTAGCTTACGGctgtagctgttttttttttttttttaggattaatGATTTTTGTTAGTAATCTTTACGAACAGTTATTTTTGACTAATTAAGTTCAGGTCAAGCTTACAACGCTGACCTCACCAAGGTCCGAGTGCATTAGCACTATTAGTCAACTaagttttttatcatttttttttaaatacttgtgTTATGGAGCTTTTTCTGGTTTACTAAGGGAATCACCTCATTAACCAACAGATGGAGCAAGTTTCTGTCATGAAGTTTGAACAGGAGTCACACGGCCTGCCACTTGGAGCATCCACCAGAGAAAGCTAACTCTGGTCATTTGGATTCACCATCATTTTTCCTGGAGGTACACAAGGGAACCTCCTTGCAGTGTGAGACAGTAGTGTCTCAGCCCCCAAAACCAGTCAACTCAAAGTAAAGCGCTGGTTATTATCTCTGTTCTCTGGTGGCATTCTGTTGGTTGGTCTAGCTTGGTTTTCtggttaaagtatttttttttttttgcatacagTCGTCACCCTTTTGAGGTCGTTTGGCGAACCATTGTGAAGCTCCGTAACTCTTAACAATCCATTACTATTAGGAGGCTATTAAGTTTAGTTGGTGGCATTTTATAACCTTTAGTTATTTGTAGCTGGTAGTATGGTGTTGAAGTAGATTTATTTATGAGTactggttgttttttatttgggttATCTTAGTGAGCGGGAGTCGCCCTTATATCCTGTTTAGTATTGCCTTTTTATAGGAGCATAGTTATTCCTATATGTGgtttttattaccttttttatGGTGGTGTTTTgtactcatgttttttttattcatgttatgGTTTTCTATTGTCTTTTATAATTGACATATTTTGTTCTTTGTAGGTTGTTGGTTTTGTATTGGATTTGATTGCTTATTCACGTATGCTACAGAAggtattgttgttgtttatcaTCTGTGTGGTTATCTTTCTGATCTCACATTGTATCTGAGCTATAATCTCTACCCAGCCATTATGTCtatatgtatacagtatgtgtggttttaattaacattattttgagttaaaaaaaaagctttcctcAAGTTGATGAATGACTCTCTGAAACTGGAAGAACCGACGCCTGAGATACATCTATTAAAACCACTACACCACCTCTAATTCCTACCAGTGTAaatagtgtatatattgtatattttgtttttgggtACTTCTGCTTTGTTATCATCacaataaacaattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143493 lncRNA upstream 148275 25213203 ~ 25213469 (+) True G106250
TU143491 lncRNA upstream 149668 25211579 ~ 25212076 (+) True G106248
TU143458 lncRNA upstream 452715 24908744 ~ 24909029 (+) True G106220
TU143455 lncRNA upstream 453813 24907148 ~ 24907931 (+) True G106217
TU143443 lncRNA upstream 563543 24797868 ~ 24798201 (+) True G106205
XR_002650605.1 lncRNA downstream 31478 25400917 ~ 25401805 (+) True LOC103043670
TU143544 lncRNA downstream 82698 25452137 ~ 25542268 (+) True G106274
TU143542 lncRNA downstream 86681 25456120 ~ 25548983 (+) True G106273
TU143521 lncRNA downstream 89376 25458815 ~ 25556234 (+) False LOC111193565
TU143519 lncRNA downstream 93068 25462507 ~ 25570821 (+) False LOC111193565
XM_007232254.3 mRNA upstream 259171 25076936 ~ 25102573 (+) True slitrk6
XM_022674918.1 mRNA upstream 1246283 23970691 ~ 24115461 (+) True gpc6
XM_022674919.1 mRNA upstream 1246283 23970691 ~ 24115461 (+) False gpc6
XM_007238141.3 mRNA upstream 1722856 23632379 ~ 23638888 (+) True LOC103035907
XM_022674913.1 mRNA upstream 1815736 23524716 ~ 23546008 (+) False chtf18
XM_022674360.1 mRNA downstream 3367 25372806 ~ 25374832 (+) True LOC103022503
XM_015607967.2 mRNA downstream 13433 25382872 ~ 25386300 (+) True LOC103023109
XM_022674930.1 mRNA downstream 50101 25419540 ~ 25422258 (+) True LOC111193564
XM_022674361.1 mRNA downstream 54273 25423712 ~ 25449279 (+) True LOC103025458
XM_022674362.1 mRNA downstream 115404 25484843 ~ 25519366 (+) True LOC111193460
TU143375 other upstream 948646 24411208 ~ 24413098 (+) True G106146
TU143241 other upstream 1372152 23987207 ~ 23989592 (+) True G106036
TU143216 other upstream 1437973 23915635 ~ 23923771 (+) True G106017
XR_002650601.1 other upstream 2541648 22810079 ~ 22820096 (+) False LOC103038624
TU142415 other upstream 3993491 21327192 ~ 21368253 (+) True G105357
TU144092 other downstream 2645077 28014516 ~ 28022047 (+) False G106661
TU144107 other downstream 2696913 28066352 ~ 28066983 (+) True G106673
TU144257 other downstream 3347163 28716602 ~ 28720280 (+) False LOC103027743
TU144751 other downstream 4410887 29780326 ~ 29780927 (+) True G107117