RNA id: TU143565


Basic Information

Item Value
RNA id TU143565
length 2264
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G106289
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 25563594 ~ 25566426 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGTACAGTAGATCCCAGCACTGGCTGAACAAATCAGAAGGGAGGCAAAACGGTATTCCAGTAGTAGCCAATGTGAAGGATCCTTCGGAACGACAAATTCCACTGTTGATTGGCAGGGGGACGGGTTTCTCTAGTGGAAGAGTTATCTTTCGTTTTATTACCTCCATTTGGCTTCTtcattgtaaaaaatatgtCTTTGCCAAAGATATGGTAAATGGTACAGTAGATCCCAGCAAgggctaaacaaaacagaaaagatATGGTTGGCCCAAAAAGTGGTGAAGTGGCCCAAAACATCCAGCTGTTGATCAGCTGGGCAAAGTTCCTGTAGAGGAAGAGGTGTCCTTTGGTCCACTACCTCCTATCAATTTTTTTACTGGGAAACATCTGAAAGATAAGGTTCATAGTACAGTAGATCCCAACACTGGCTGAAGGAACCAGAAGTGAGGCAAATCGGTAGTGCAGTCAACTTGAAGGATCCTTTGGATCCGTGAAGCTGTTGATTGGCAAGGGGGTGGGTTTCTTTTTAGAAAGATGTGTCTTTTGTTCCAGTGCCTCCAATCAGCTTCATTGGAAAAGATCTGAAAGGTTATGGTTTATGGTACAGCAGGTCCCAACACTGGCTAGAGGGACCAGAAGTCAGAGGGAATGGTAGCCCAGTCAACATGAAGGATCTGTTGATTGCTGTTGATTGGCAAGGGGGGGAGGGGTTTTGTTTGAGGAACAAGTGTCTTTTGTTGCACTGCTTCCAATTGGCTTCTTAATTGAGAAAGAAGTAAAAGATATGGTAAATGGTACAGTAGTTCTCAGCAAGGGCTAAACTAACCAGAAACGGAACCAGAAGAGAGACAAAACGGTAGTGCAGTCAACTTGAAGGATCCTTTGGAACAATAAAGCTGTTGATTGGCAAGGAGGGCAGGTTTTTGTTGAGGAAGAGTtgtcttttgttttattacctCCATTTGGCTTCTCAATTGTAAAAGATATGTCATTGCTAAAGATATGGTAACATGGTACAGTAGATCCGAGCAAGGGCTAAACAAACCAGATAAGATTCGGTTGGCCCAAAAAGTGGTGTGGTGGCCCAAAACATCCAGCTGTTGATTGGCAGAGGGCGGAGTTCCTGTAGAGGAAGAGGTGTCTTTTGGTCCCCTTCCTCCAATCAGATTCTTTATTGGGAAAGATCTGAAAGATATGGTTCATGGTATAATAGATCCCAACACTGGCTGAAGGAACCAGAAGAGAGGCAAATCGGTAGCATTGTCAATGTGTAAGATCCTTTGGAACGATGTAACTGTTGATTGGCAGGGGGGCAGGGTTTCTTTCGAGGAAGAGGTGTCTTTTGCTCCAATGCCTTAAATCAGATTCTTCATTGAGAAATATCTGAAAGATTTGGTTCATAGTACTGTAGATCCCATTACTTGCTGAAGAACCCAAGAAAGGTAAACATAAAGGTTAGCCTAAAACATCCAATTGTTGATTGGCATGGGGGCGGGGTTTCTTTTGAGGAAGAGGTGTCTTTTGTTCCAGTGCCTCAAATCAGATTCTTCATTGGGAAAGATCTGAAAGTCATGGTTACATGGTACAGTAGATTCCAGTACTGGCTGAAGGAACCAGTATGTAAAGTAGAGATACGGTTGGTTTCTGCAGTAGTAGTCAATGTGAAGGATCCTTTGGAACGACGCATCCATTCattattcaataataataataatgttaattagtACATACTATGTGTGTCTTTGTTGTGTAAAGAGTCATTTAGCATTGTCTTAACTGAAGGTAGCCAGTCAGGTAAGCTCTGTCGGCAGGTCCTGACATGGTACAAGTCCTGGTACCACTCTATAACTGGTTCATGAGCTGGTCAAGGTTGCACAAGTTCTCCAAACATGAACCAGGTAAATTAGCAATGAAATCTGACTCTTCTGACCAAACCGGGACAAACCGGGCCGGCCCATTCCAGATCTGAACTCCTGCTCACAGTATTCTGAATATCCAGCACATCCACCATATTCAACCATGCCCTCCGTAGGCATCCTTCAGGGCATCCTGCTGGAGTGACAGGCAGACAGACCTGCATGCCGCCTGCCTCTTCCCCTGTGCCATCCCTcgttctctctccttctcttcttctctccttcAGTTCCccactttctcttcctctcccttGCTTTCGTGCCAGCTCCTCCTCTTTAAATATGCCTTTTCATGTGCAGTGCCAAGTGGTCCGACCGCGAGAAGCACCTGTAGAAAACGGGAGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143545 lncRNA upstream 3566 25558581 ~ 25560028 (+) True G106275
TU143521 lncRNA upstream 7360 25458815 ~ 25556234 (+) False LOC111193565
TU143561 lncRNA upstream 8879 25552591 ~ 25554715 (+) True G106286
TU143542 lncRNA upstream 14611 25456120 ~ 25548983 (+) True G106273
TU143557 lncRNA upstream 16784 25542607 ~ 25546810 (+) True G106284
TU143668 lncRNA downstream 143790 25710216 ~ 25710456 (+) True G106370
TU143716 lncRNA downstream 388511 25954937 ~ 25960449 (+) True G106391
TU143687 lncRNA downstream 459818 26026244 ~ 26030682 (+) True G106380
TU143777 lncRNA downstream 599690 26166116 ~ 26171801 (+) False LOC103037236
TU143794 lncRNA downstream 656710 26223136 ~ 26228689 (+) True G106446
XM_022674931.1 mRNA upstream 7582 25519671 ~ 25556012 (+) True LOC111193565
XM_022674362.1 mRNA upstream 44228 25484843 ~ 25519366 (+) True LOC111193460
XM_022674361.1 mRNA upstream 114315 25423712 ~ 25449279 (+) True LOC103025458
XM_022674930.1 mRNA upstream 141336 25419540 ~ 25422258 (+) True LOC111193564
XM_015607967.2 mRNA upstream 177294 25382872 ~ 25386300 (+) True LOC103023109
XM_007239760.3 mRNA downstream 173801 25740227 ~ 25759643 (+) True ube2f
XM_022674933.1 mRNA downstream 197421 25763847 ~ 26023673 (+) True LOC103038099
XM_022674393.1 mRNA downstream 509272 26075698 ~ 26078799 (+) True LOC111193484
XM_022674937.1 mRNA downstream 587991 26154417 ~ 26170123 (+) True LOC103037236
XM_022674363.1 mRNA downstream 622539 26188965 ~ 26193144 (+) True LOC103039357
TU143503 other upstream 194155 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other upstream 194155 25361744 ~ 25369439 (+) False LOC111193563
TU143375 other upstream 1150496 24411208 ~ 24413098 (+) True G106146
TU143241 other upstream 1574002 23987207 ~ 23989592 (+) True G106036
TU143216 other upstream 1639823 23915635 ~ 23923771 (+) True G106017
TU144092 other downstream 2448090 28014516 ~ 28022047 (+) False G106661
TU144107 other downstream 2499926 28066352 ~ 28066983 (+) True G106673
TU144257 other downstream 3150176 28716602 ~ 28720280 (+) False LOC103027743
TU144751 other downstream 4213900 29780326 ~ 29780927 (+) True G107117

Expression Profile