RNA id: TU143777


Basic Information

Item Value
RNA id TU143777
length 234
lncRNA type sense_over
GC content 0.46
exon number 3
gene id LOC103037236
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 26154417 ~ 26171801 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGACGGAGAAATCAGATCTGATCATCTAGATTCCAGAAATGGATCAGAAGTGGATCTTAGTTTTCTGGCTGTTCTCAGCTGTGTGTGGTGTATCTCCATACGTTCCTCATCGGTATCACTTTGTGGATCAGAGTAAAACCTGGACTGAAGCTCAGAGCTACTGCAGACAGAACTACACTGATCTGGCCACCATCAACAACATGGACGAGATGAAGAAGCTGAACGAGACTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143687 lncRNA upstream 135434 26026244 ~ 26030682 (+) True G106380
TU143716 lncRNA upstream 205667 25954937 ~ 25960449 (+) True G106391
TU143668 lncRNA upstream 455660 25710216 ~ 25710456 (+) True G106370
TU143565 lncRNA upstream 599690 25563594 ~ 25566426 (+) True G106289
TU143545 lncRNA upstream 606088 25558581 ~ 25560028 (+) True G106275
TU143794 lncRNA downstream 51335 26223136 ~ 26228689 (+) True G106446
TU143826 lncRNA downstream 113091 26284892 ~ 26285416 (+) True G106466
TU143837 lncRNA downstream 137928 26309729 ~ 26309982 (+) True G106476
TU143847 lncRNA downstream 280407 26452208 ~ 26452448 (+) True G106486
TU143910 lncRNA downstream 597813 26769614 ~ 26769877 (+) True G106541
XM_022674393.1 mRNA upstream 87317 26075698 ~ 26078799 (+) True LOC111193484
XM_022674933.1 mRNA upstream 142443 25763847 ~ 26023673 (+) True LOC103038099
XM_007239760.3 mRNA upstream 406473 25740227 ~ 25759643 (+) True ube2f
XM_022674931.1 mRNA upstream 610104 25519671 ~ 25556012 (+) True LOC111193565
XM_022674362.1 mRNA upstream 646750 25484843 ~ 25519366 (+) True LOC111193460
XM_022674363.1 mRNA downstream 17164 26188965 ~ 26193144 (+) True LOC103039357
XM_022674365.1 mRNA downstream 73438 26245239 ~ 26248347 (+) True LOC103039973
XM_022674934.1 mRNA downstream 78372 26250173 ~ 26254877 (+) True LOC111193566
XM_007232550.3 mRNA downstream 339320 26511121 ~ 26515238 (+) True slitrk1
XM_022674395.1 mRNA downstream 467166 26638967 ~ 26643210 (+) True LOC111193487
TU143503 other upstream 796677 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other upstream 796677 25361744 ~ 25369439 (+) False LOC111193563
TU143375 other upstream 1753018 24411208 ~ 24413098 (+) True G106146
TU143241 other upstream 2176524 23987207 ~ 23989592 (+) True G106036
TU143216 other upstream 2242345 23915635 ~ 23923771 (+) True G106017
TU144092 other downstream 1842715 28014516 ~ 28022047 (+) False G106661
TU144107 other downstream 1894551 28066352 ~ 28066983 (+) True G106673
TU144257 other downstream 2544801 28716602 ~ 28720280 (+) False LOC103027743
TU144751 other downstream 3608525 29780326 ~ 29780927 (+) True G107117

Expression Profile