RNA id: XM_022674375.1


Basic Information

Item Value
RNA id XM_022674375.1
length 4730
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC103027743
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 28703067 ~ 28724026 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGATTGCGTGCAAGAGAGGTGGAGCGATATTAGAGAGAATAAtaaagaaagaggagagataCTGTACAGATCAGAACAGGAGGTGAAGAACGAGGGAGACACATCAGGACGAAGAAATCAGATCTGAACGTCTAGATTCCAGAAATGGATCAGAAGTGGATCTTAGTTTTCTGGCTGTTCTCAGCTGTGTGTGGTGTATCTCCATACGTTCCTCATCGGTATCACTTTGTGGATCAGAGTAAAACCTGGACTGAAGCTCAGAGATACTGCAGACAGACCTACACTGATCTGGCCACCATCAACAACATGGACGAGATGAAGAAGCTGAACGAGACTCTGAAGGATAAAACTCAAGCCTTTGTGTGGATCGGTCTGAACAGAGGGGACACTGAGAAATGGAGGTGGTCTCTGCCAGACGGAAATTTCTACACTGTAGAAGATAAAAACCAGACCTGGAGAAGTGGAGAACCAAATAATTATGGAGGGAATGAGTTCTGTGTTTCGATGTATAAACAAGATGGAACGTGGTTTGATGTCAGCTGTGAGAATACATATACTTTTGTGTGTTCCAACGaaaataaaccaaaCGCTGAGAGATACGTATTCATTAATGAACAAAAGACCTGGCGTGAAGCTCAGAGATACTGCAGAGAACATCACACAGACCTGGCCAGTGTGAGGAATGAGACTGAGAGATGGCAGGTCCATGCAGCAGGAAATGGTGTTAATTTCTGGATCGGTCTGTTTAAGGACTCCTGGAAGTGGTCAGATCAGAGCAGCTCCTCATTTCGGTACTGTGAGTCTAACCAGCCAGATAATAATGATCTTACAAAATGTGCTGCAGCTTCTGTGAAGGACCAGGGTCAGTGGCATGATATAAAATGTGATGAACAGTACCCTTTCATCTGCCATGAGAATAAGCTGGTCTTGATCCAGCAGAATCTGAGCTGGAAAGGAGCTCTGAGATACTGCAGAGAGAATCATGTGGACCTGGTCTCAGTTCACTCTGAGGAGATCCAGCTCTGGGTGAAGGATGTGGCTCAGAAAGCCTCCACTGATCATGTGTGGCTGGGTCTGCGTCACACCTGCGCCCTCAGCTTCTGGTTCTGGGTGGGTGGAGAGTCTTTCTGCTATGATAACTGGGCTCCAGGTAACGGGACAGAAGGTGAAGACTGCAGTCCTGTAGAGAGAACCGGAGCGGTGCAGGCTAGAGGAGATCAGCAGTGGGTCAGCCTGCCTGAGAACCAGACTCTCAACTTCATCTGCATCAGATATGAAGaaaataaaccaaaCGCTGAGAGATACGTATTCATTAATGAACAAAAGACCTGGCGTGAAGCTCAGAGATACTGCAGAGAGAATCATGTGGACCTGGTCTCAGTTCACTCTGAGGAGATCCAGCTCTGGGTGAAGGATGTGGCTCAGAAAGCCTCCACTGATCATGTGTGGCTGGGTCTGCGTCACACCTGCGCCCTCAGCTTCTGGTTCTGGGTGGGTGGAGAGTCTTTCTGCTATGATAACTGGGCTCCAGGTAACGGGACAGAAGGTGAAGACTGCAGTCCTGTAGAGAGAACCGGAGCGGTGCAGGCTAGAGGAGATCAGCAGTGGGTCAGCCTGCCTGAGAACCAGACTCTCAACTTCATCTGCATCAGATATGAAGGAACGCGATCCCGTCCTGGAGCGGTCCAGGACTGGGTGGTGGAACATCAGGCCAGGTTTAAGTTGGGGTTCGAGGAAGCCCGTGAGCAGCTGTTGGTAGCTGCTGGTCGCCAGAAGGAACGACATGATCAGTGGGTTCGGGAATTGCCCTTATGGGAAGCATTAACAGATATTAGTAGATATTTGATTCTAGGAATGGATCAGAAGTGGATCTTAGTCTTCTTACTGTTCTCAGCTGTGTGTGGTGTATCTCCATACGTTCCTCATCGGTATCACTTTGTGGATCAGAGTAAAAACTGGACTGAAGCTCAGAACTACTGCAGACAGAACTACTCTGATCTGGCCACCATCAACAACATGGACGAGATGAAGAAGCTGAACGAGACTCTGAGGGGTAAAGGTGGAGAATTTGTTTGGATTGGTCTGGACAGAGGGGACACTGGGAAATGGAGGTGGTCTCTGCCAGATGGAAATGCCTACACTGTAGAAGATACAGACCAGAACTGGAGAAGTGGAGAACCAGATAATCGTGGAGGAATAGAGTTCTGTGTTTCGATGTTTAAACAAGATGGAAAGTGGTTTGATGACAACTGTGAGAGTAAACatacttttgtgtgttttgacgAAAATATACCAAACACTACGAGATACGTATTCATTAATGACAAAAAGACCTGGCGTGAAGCTCAGAGCTACTGCAGAGAACATCACACAGACCTGGCCAGTGTGAGGAATGAGACTGAGAGACAGCAGATCACTGCAGGAGGAAATGGTGATAATTTCTGGATCGGCCTGTTTAAGGACTGGAAGTGGTCAGATCAGAGCAGCTCCTTATTTCGATACTGGGAGTCTAACCAGCCAGATACTAATGATAAATGTGCTGCAGCTTCTGTGAAGGACCAGGGTCAGTGGCATGATATAAAATGTGGGAAGCAGTGCCCTTTCATCTGCCATGAGAATAAGCTGATCTTGATCCAGGAGAAGCTGACCTGGAAAGGAGCTCTGAGATACTGCAGAGAGAATCATGTGGACCTGGTCTCAGTTCACTCTGAGGAGATCCAGCTCTGGGTGAAGGATGTGGCTCAGAATGCCTCCACTGATCATGTGTGGCTGGGTCTGCGTCACACCTGCACTCAGGGATTCTGGTTCTGGGTGGGTGGAGAGTCTTTCTGCTATGATAACTGGGCTCCAGGTAACGGTGCAGAAGGTGAAGACTGCAGTCCTGTAGAGAGAACCGGAGCGGTGCAGGCTAGAGGAGATCAGAAGTGGGTCAGCCTGCCTGAGAACCAGACTCTCAACTTCATCTGCATCAGATATGAAGCCGCTGACACGGGAAGAGCTGAGCCACCAGGAGTCGCCAACGCGGGGACCACTGAGCTGCTAGGAGTCGCCAATGCGGGAAGAGCTGAGCCACCAGGAGTCGCCAACGTAGGAAGAGTTGAGGCACTGGGAGTTGCCAACACGGACACCGCTGGGCTGCTGGTAGTCGCCAGTGCAGGAAGAGCTGAGCCAGCAGGAGGCGGCAACTCGGGAAGAGCTCCGCCACCGAGAGTCGTCGAGACAGGGACCACTGAGCTGCTTGGAGTTGCTGATGCGGGAACCGGTAAGCTGGCGGCAGTCACCGATGCAGGAACCGGTGAGCCGCCGGGAGTCGCCACCGTGGGGACCAGTGAGCCGACAAGAGCAGGCAACACAGGAACTGCTGAGCTGGGTCCGCTGAGCCGGCGATTCGCCAGTGCAGGAAGAGCTGAGCCACCAGGAGTCGCCAACGTAGGAAGAGTTGAGGCACTGGGAGTTGCCAACACAGAAACAGAACAAGAACCAGACAGTGGAGCAGTGTTGGCTCACATAGACTGTGTGATAACAGGAGGTGAAGAACGACTGAAACACATCAGTAAGGAGAACTCGGGTCTGATCACCTACATTAACAGATATTTGATTCTAGAAATGGATCAGAAGTTGATCTTGGTCTTCTTACTGTTCTCAGCTGTGTGTGGTGTATCTCCATACGTTCCTCATCGGTATCACTTTGTGAATGAGAATAAAACCTGGACTGAAGCTCAGAACTACTGCAGACAGAACTACACTGATCTGGCCACCATCAACAACATGGACGAGATGAAGAAGCTGAACGAGACTCTGAAGGGTAAAGGTGGAGAATTTGTTTGGATTGGTCTGAACAGAGGGGATACTGGGAAATGGCGGTGGTCTCTGCCAGATGGAAATTTCTACACTGTAGGAGATAAAGACCAGAACTGGAGAAATGGAGAACCAAATAATCTTGGAGGAAAGGAGTTCTGTGCTGCGATGTATGAACAAGATGGAAAGTGGTTTGATGAAAACTGTGAGAAAAAACATACTTCCAAAAGAAAACCAAACACTGAGAGATACATATTCATTAATGAAGAAAAGACCTGGCATGAAGCTCAGAGCTACTGCAGAGAACATCACACAGACCTGGCCAGTGTGAGGAACGGGGGGGGAATATGGAAGATCAAAGCAGGAAATGGTGATAATTTCTGGATCGGCCTGTTTAAAGACTCCTGGAAGTGGTCAGATCAGAGCAGCTCCTCATTCCGATACTGGAAGTCTAATCAGAcagataataatgataaatgtGCTGCAGCTTCTGTGAAGGACCAGGGTCAGTGGCATGATATAGGTTGTGAGGAACCGCACCCTTTCATCTGCCATGAGAATAAGCTGATCCTGATCCAGGAGAATCTGAGCTGGGCAGGAGCTCTGAGATACTGCAGAGAGAATCATGTGGACCTGGTCTCAGTTCACTCTGAGGAGATCCAGCTCTGGGTGGAGGATGTGGCTCAGAAAGCCTCCACTGATCATGTGTGGCTGGGTCTGCGTCACACCTGCACCCTCAGCCTCTGGTTCTGGATGAGTGGAGACTTTATCTGCTATGATAACTGGGCTCCAGGTAACGGGACAGAAGGTGAAGACTGCAGTCCTGTAGAGAGAACCGGAGCGGTGCAGGCTAGAGGAGATCAGCAGTGGGTCAGCCTGCCTGAGAACCAGACTCTCAACTTCATCTGCATCAGATATGAAGGTTAGATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144230 lncRNA upstream 29131 28667659 ~ 28673936 (+) False G106760
TU144233 lncRNA upstream 29131 28667659 ~ 28673936 (+) False G106760
TU144232 lncRNA upstream 29131 28669733 ~ 28673936 (+) False G106760
TU144220 lncRNA upstream 29131 28670587 ~ 28673936 (+) True G106760
TU144226 lncRNA upstream 31974 28667114 ~ 28671093 (+) False G106760
TU144288 lncRNA downstream 2894 28726720 ~ 28727094 (+) True G106791
TU144289 lncRNA downstream 3460 28727286 ~ 28727720 (+) True G106792
TU144292 lncRNA downstream 10469 28734295 ~ 28734971 (+) True G106795
TU144296 lncRNA downstream 52720 28776546 ~ 28777037 (+) True G106799
TU144297 lncRNA downstream 54356 28778182 ~ 28778480 (+) True G106800
XM_022674374.1 mRNA upstream 146 28702012 ~ 28702921 (+) True LOC111193466
XM_022674373.1 mRNA upstream 5971 28692844 ~ 28697096 (+) True LOC111193465
XM_022674372.1 mRNA upstream 10762 28689555 ~ 28692305 (+) True LOC111193464
XM_022674370.1 mRNA upstream 703215 27993999 ~ 27999852 (+) True LOC111193463
XM_007234822.2 mRNA upstream 797422 27890718 ~ 27905645 (+) True LOC103043862
XM_022674952.1 mRNA downstream 62138 28785964 ~ 28791991 (+) True LOC111193571
XM_022674377.1 mRNA downstream 87998 28811824 ~ 28815508 (+) True LOC111193468
XM_022674951.1 mRNA downstream 117353 28841179 ~ 28865225 (+) False LOC111193570
XM_022674950.1 mRNA downstream 117354 28841180 ~ 28865221 (+) True LOC111193570
XM_022674378.1 mRNA downstream 402047 29125873 ~ 29127641 (+) True LOC111193469
TU144107 other upstream 636084 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 681020 28014516 ~ 28022047 (+) False G106661
TU143503 other upstream 3333628 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other upstream 3333628 25361744 ~ 25369439 (+) False LOC111193563
TU143375 other upstream 4289969 24411208 ~ 24413098 (+) True G106146
TU144751 other downstream 1056500 29780326 ~ 29780927 (+) True G107117

Expression Profile