RNA id: TU144361


Basic Information

Item Value
RNA id TU144361
length 2522
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G106819
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 29052531 ~ 29058905 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

attgCTTATCTTACAAAATGGGCATAATGAAAATGTATGCACATTCACAATGATGTATTCAATTAATGAATCAATCcatcaaacaaacagacaaacagacagacagacagacagacagacagacacatgttCTTGTGTAAACTTACTTGAGTGGATACATTCTGAGGGCAACATCCATGCCTGGGCAGTAGGACAGGAAGGCTGCCAGAGCCGTTTCCTCAAACAGCCCAAATATTAAGATTTTGTTTTCATTCCCTGCTGTAAGATGGAATTCCTCCTGGTCTTACAGATGATCAGATCGGCCCACTGCACAATCACAATACTGGCGAAGAACGCAGTGTGACACGTGTACTCTACGATCTTTCTGCGCTCGTACGTCTgtaacagtgataataaaatgattataataTAACAGTCTAGTGTAAAACTGATAATCAGAATTTTACATTTCTGATAATCTAATAAAATGTGCTCTACGCACCCACTGCTGTCCGTAACTGTCCTCTAAATCATTGTGAAATTTATCATCCCAGTTCACACGCAGGCCTATCAGATCCCCAGGCAGGAAACCGTTCTCAGCCAAGATCACAAAGTAGGTGAAGAACCCTGCAGTAGCTTGCATCATTCctaaaagacaaagaaaaaacagatattAGAATGAaagatcaattttttttataacatgttttttaattatgttttataatttaattttataaaaggtcATAATAAATTCTCCTACCAATCTGCCCATAAGCCATACTGATGAGCCTTTCATTCACCAGCTTGTCTGTTTTAGCATTTCTGGGCTGTCTCTTCATGATGTCACTCTCAGCAGCTTCGTAGGCCAATGAAATAGCAGGTacctataatatataataaaaaatatatatatacttattgcATGATTGTCTTTACACTCACACAACCAGGGGCATCGCTAGCCTTTTATAGGGGCACTGAAGCATCTCTAAAAGAAGTATCAGCTCCCCGAAAAGTGAAAGCagatgttgtgtttttgtttgatttgtaaACAGAAGTTAGTATCTGATAAGCTTAACAGGTTCCGATCTGATACAGACAAAggatttgtaaatgtaaaaaatataaatccaTTTCTAAAACtaagtttatttccattgctacagACGAGCTGTAATCTGTTAAACAATTCattgtttgctaaaaatcacccccccccccttttttttaaacaatatacaatatacaatatacatttacattgttttgttttttagttaatttgttttccttaaagcCCTGGCAGTTTACGTTAgtttacactggattttgtacaaAATAgcagtgttctaaaacttttgaccggcaGCGTAAGTATACTAAATGcaatttacaaatgtatttattttgttgtcagtatctatttatattattattaatcagatcACTTTATTGCAACTATTGCAACTTTATTAGTTACAAACGTTTTCTGGGAAATGTTTAGAATAGTTTGAGTGTTCTTAAGCAGGAGGTTGTAGGATTACAGAAGCCTATTGCTGCCAATTACTATTAAAAAATCATTAGTATGTCATTATCATGAGATCTTATGTCATAGttctaaaataaacatattctaATTAGGAGAACATGTCATAATTATGCGATATTATGTCATAAAAATGACCTATACAACATCTCGTTATTATAaagtaaaaagtttaaaaatgttggtatTTGGGGGGTTTAgcgcctctctggtgagaatgggtaattgcactgagcatgcggaagaatcattttaaacttggtgggtgtgatgcggcctcctttcagagtggatgaatccgattccaggttatgttcagtcagagagaaagagagaagagctcagtcagaaacttcactccttcgtttctttggttttactacgagtgaatgagctactgagctctgagtttcctcttctgaagtctccattgctccaccagccgctcgcgttcagtaaaactgagccagatcctcttttaaaggctgtacatgtgacgtaattACGTGAAGACGTTAAGATGCCATTTTggttatgaaataaacatcttgTATTTATGATATAATGTCATAACTGCAACATATTTAATTATAACCTAATACTGTATCTCGCAATAACaagatactttctcataattacgagGTGTTTTATGTCATAATTACATCTTATATCTTTAAGACATAATATCTCTAATAATAATTAGATGTGTATTTCATGATTATGGGATAATATCTTGTaataacgttttttttatttctcctttaGGCCTGCTTACCATGTCAGTTCCCAGGTCAATACACAGAATGGTGACAGTGCCCAGAGGAAGAGGAATGTTGGcgatgatgaagaggaggaaAGGTGAGATCTCAGGAATGTTACTGGTCAGGGTGTAGGCAATAGATTTCTTCAAGTTGTCAAAAATCAGACGACCTGGGGAGGAAATgatagttttaaaaatatataaatggttTCAACAAAACATTTAGGATCCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144366 lncRNA upstream 78 29050435 ~ 29052453 (+) True G106822
TU144383 lncRNA upstream 78137 28972732 ~ 28974394 (+) True G106838
TU144328 lncRNA upstream 187462 28812772 ~ 28865069 (+) True G106803
TU144337 lncRNA upstream 201923 28829299 ~ 28850608 (+) True G106807
XR_002650609.1 lncRNA upstream 238480 28813405 ~ 28814051 (+) True LOC111193572
TU144359 lncRNA downstream 2136 29057319 ~ 29058905 (+) False G106819
TU144365 lncRNA downstream 8935 29064118 ~ 29073452 (+) True G106821
TU144400 lncRNA downstream 24217 29079400 ~ 29093440 (+) True G106855
TU144403 lncRNA downstream 57137 29112320 ~ 29113337 (+) True G106856
TU144404 lncRNA downstream 57192 29112375 ~ 29113337 (+) False G106856
XM_022674951.1 mRNA upstream 187306 28841179 ~ 28865225 (+) False LOC111193570
XM_022674950.1 mRNA upstream 187310 28841180 ~ 28865221 (+) True LOC111193570
XM_022674377.1 mRNA upstream 237023 28811824 ~ 28815508 (+) True LOC111193468
XM_022674952.1 mRNA upstream 260540 28785964 ~ 28791991 (+) True LOC111193571
XM_022674375.1 mRNA upstream 328705 28703067 ~ 28723826 (+) True LOC103027743
XM_022674378.1 mRNA downstream 70690 29125873 ~ 29127641 (+) True LOC111193469
XM_022674953.1 mRNA downstream 93882 29149065 ~ 29159524 (+) False LOC111193573
XM_022674957.1 mRNA downstream 153368 29208551 ~ 29238624 (+) False LOC103024513
XM_022674958.1 mRNA downstream 153368 29208551 ~ 29237973 (+) False LOC103024513
XM_022674956.1 mRNA downstream 153369 29208552 ~ 29241597 (+) True LOC103024513
TU144257 other upstream 332251 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 985548 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 1030484 28014516 ~ 28022047 (+) False G106661
TU143503 other upstream 3683092 25361744 ~ 25369439 (+) True LOC111193563
TU144751 other downstream 725143 29780326 ~ 29780927 (+) True G107117

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU88599 True 2965 lncRNA 0.40 3 CM030128.1 17403511 ~ 17453367 (+)
tiger barb (Puntius tetrazona) TU88599 True 1815 lncRNA 0.42 3 NC_056706.1 1402724 ~ 1494731 (+)