RNA id: TU144366


Basic Information

Item Value
RNA id TU144366
length 1896
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G106822
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 29050435 ~ 29052453 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctcgttttttttataattcactttatttcagatatatatagaataaattCATTTGTGGAATAGAAACTGGCAGGCAGTCTTTTTGATGGGTAATGGAAATGAGTGGATGGTTCAGGGGAAATGAGAGAACTCCTCCTTGGTTTAATAATACGTCTCTTTTTCCACCCAGCCTCTGGATTCCGTCTAAGGAGGTATCTTCTCGCCTCATCATAAAGGAAGATGAGCAGTGAATATGGGAAAGCACAGAACCACCAGCATGGCCTAAACGGAATAAGACATAACTTTAAACATAATGTCACTGATATATATGACATACAAACTTCATAGGACCCTATTCATGAGGGATAGACGATATGGCATCCACATGTAaattattaatacaattttagggtatttttctaataacaatacaaaaatacatggttaaattgtatttagtatatttacactACTGGTCAAAGTAAAAACAcctattttttcagtttattttggccatttaagctcttcaggtccagttaatatctgtaaaatattacaaaatccaAAGTAAGCTAAAGTAAATTGCTTGGGCCTTTTAGGAAAACAAATGGACTAAAAAATTTTTAcaaaagtatattgtaaaaaaaacaggaaaaaacgTTTAGTCtctaaataattgttttaaaaagaggGGGTTATTTTTAGCAAACAATACATGGGTTAACATATTACAGCTGGTAggtagcaatggaaataaacagagcttttcaaatggttttaaaagaaaatgtcaatTTCCAAAGTGTTTTTCTGTAGTAAATCAGtaaattcacactttcatcatcataataactagaaaaaaaacacagaaacacagagagaaacactctgtaactatttagagaaattacagatgaaacCAGAGAGCAGTGAgaactgtttcctacaccttcaaataaaaacTCTTTTAAACTGGAGGAAAttgctacaggaagagtcacgtctggctgacccacatggaaacagcagctttagctgtttaaaatgtttagctcagattaaaattgtactaagtctcagtttcagtagTGTAGAGAACAATAAGAGGTCTGACAGATGAAAAACTGCAGTAATTAAGTCATTACTAAGATGACAAAATACAGCATACAGCACTGCAGCTACTGGACAACTAAACAATAGGGGTGTTCttaaacttttgaccggtagtgtATACCTAGTTgtactgtcatgtctggtgctgaatgCACACCTGTGTTCCcctcactcagctctacctgcgatttCCAAGCttccaactacaatacccagaacgcacctcaccatgacatcacacacactcccgatcacatggtACACCGCAtgacacctccaggaagtcctgagtaCTGATTACCATTCAGTATAAATAGACCAGGCTCACGCTCACTCCTCGCCGAGTAATTGTATTGGTTCTACCCtgcattacaaagcgtttcCATTGCCTGATTGTTATTTTCGTGTATGATCCTTTTCCGTGTTTttccgactttgatttttgccttgcccgtGTATTGGatattctgtgtatgacctggagTGTGTCTCACttggatttttgcctactcTGTGATACTCTctgctcgtgtatgaactctggactgtctcccgtttatggtatggtttcccCGCTCATTGTTTCTCTGGTATTGACCTGGCTTGTTTTGACTACCCCTGCtgaatcttttaataaaagatttTTATCGTATCTGCACAAGTCTCCTCCTTGTCTGGCCCTGGCATgtacacaaaataaattatgtaacataaaaatatgtaacAAAACTAAAGTGTAGAATATTGTGTTCaagcatttaaacaaatatttaaaaaataatattaaattttcacagtaaaaag

Function

GO:

id name namespace
GO:0015291 secondary active transmembrane transporter activity molecular_function
GO:0015293 symporter activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG:

id description
ko04978 Mineral absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144383 lncRNA upstream 76041 28972732 ~ 28974394 (+) True G106838
TU144328 lncRNA upstream 185366 28812772 ~ 28865069 (+) True G106803
TU144337 lncRNA upstream 199827 28829299 ~ 28850608 (+) True G106807
TU144326 lncRNA upstream 236373 28809335 ~ 28814062 (+) False G106803
XR_002650609.1 lncRNA upstream 236384 28813405 ~ 28814051 (+) True LOC111193572
TU144361 lncRNA downstream 78 29052531 ~ 29055183 (+) True G106819
TU144359 lncRNA downstream 4866 29057319 ~ 29058905 (+) False G106819
TU144365 lncRNA downstream 11665 29064118 ~ 29073452 (+) True G106821
TU144400 lncRNA downstream 26947 29079400 ~ 29093440 (+) True G106855
TU144403 lncRNA downstream 59867 29112320 ~ 29113337 (+) True G106856
XM_022674951.1 mRNA upstream 185210 28841179 ~ 28865225 (+) False LOC111193570
XM_022674950.1 mRNA upstream 185214 28841180 ~ 28865221 (+) True LOC111193570
XM_022674377.1 mRNA upstream 234927 28811824 ~ 28815508 (+) True LOC111193468
XM_022674952.1 mRNA upstream 258444 28785964 ~ 28791991 (+) True LOC111193571
XM_022674375.1 mRNA upstream 326609 28703067 ~ 28723826 (+) True LOC103027743
XM_022674378.1 mRNA downstream 73420 29125873 ~ 29127641 (+) True LOC111193469
XM_022674953.1 mRNA downstream 96612 29149065 ~ 29159524 (+) False LOC111193573
XM_022674957.1 mRNA downstream 156098 29208551 ~ 29238624 (+) False LOC103024513
XM_022674958.1 mRNA downstream 156098 29208551 ~ 29237973 (+) False LOC103024513
XM_022674956.1 mRNA downstream 156099 29208552 ~ 29241597 (+) True LOC103024513
TU144257 other upstream 330155 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 983452 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 1028388 28014516 ~ 28022047 (+) False G106661
TU143503 other upstream 3680996 25361744 ~ 25369439 (+) True LOC111193563
TU144751 other downstream 727873 29780326 ~ 29780927 (+) True G107117

Expression Profile