RNA id: TU144407


Basic Information

Item Value
RNA id TU144407
length 427
lncRNA type inter_gene
GC content 0.66
exon number 2
gene id G106859
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 29135975 ~ 29136449 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGAGGTCCTGTAGCGCGGCTCGGCTGCTACCGCGGAAATCACGGGGCACGGTTCGGCAGCTACCGCGAGGAACACGGGGCGAGGTTCGGCTGCTACCGCGGGGATCTCGGGGCGCGGTTTCACAGCCGTCACAGAAGTCACGGAGCGTGGCTTAGCCGCTGAAGACGCTAGCTTGAGAGGCGCCGGGGATGCTAGCGCCTTAGCCACTGGAGAAGCTAGCTCTGGAAgcgcCGGGACGGAGCGCGCCTTGGGAGGCGGACGGACGGGAGTCGGCGTCTGGAGAACCGGTGCTGCTTTAGTTCTCCCCGGGGTGGATGCCGCTTCCTCCAGGAACCAGGGTGGACACATGTGTGCTGGAGGCAGAACAGCCCCTGGAGGCAGCGGCAGACGAGCTGGTGTAGGGAGaaagtcctcctcctcctcagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144405 lncRNA upstream 17229 29118496 ~ 29118746 (+) True G106857
TU144403 lncRNA upstream 22638 29112320 ~ 29113337 (+) True G106856
TU144404 lncRNA upstream 22638 29112375 ~ 29113337 (+) False G106856
TU144400 lncRNA upstream 42535 29079400 ~ 29093440 (+) True G106855
TU144365 lncRNA upstream 62523 29064118 ~ 29073452 (+) True G106821
TU144492 lncRNA downstream 12641 29149090 ~ 29159680 (+) True LOC111193573
TU144537 lncRNA downstream 186096 29322545 ~ 29323347 (+) True G106954
TU144582 lncRNA downstream 230237 29366686 ~ 29367170 (+) True G106992
TU144583 lncRNA downstream 230917 29367366 ~ 29367681 (+) True G106993
TU144602 lncRNA downstream 267437 29403886 ~ 29404268 (+) True G107012
XM_022674378.1 mRNA upstream 8334 29125873 ~ 29127641 (+) True LOC111193469
XM_022674951.1 mRNA upstream 270750 28841179 ~ 28865225 (+) False LOC111193570
XM_022674950.1 mRNA upstream 270754 28841180 ~ 28865221 (+) True LOC111193570
XM_022674377.1 mRNA upstream 320467 28811824 ~ 28815508 (+) True LOC111193468
XM_022674952.1 mRNA upstream 343984 28785964 ~ 28791991 (+) True LOC111193571
XM_022674953.1 mRNA downstream 12616 29149065 ~ 29159524 (+) False LOC111193573
XM_022674957.1 mRNA downstream 72102 29208551 ~ 29238624 (+) False LOC103024513
XM_022674958.1 mRNA downstream 72102 29208551 ~ 29237973 (+) False LOC103024513
XM_022674956.1 mRNA downstream 72103 29208552 ~ 29241597 (+) True LOC103024513
XM_022674959.1 mRNA downstream 92274 29228723 ~ 29241597 (+) False LOC103024513
TU144257 other upstream 415695 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 1068992 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 1113928 28014516 ~ 28022047 (+) False G106661
TU143503 other upstream 3766536 25361744 ~ 25369439 (+) True LOC111193563
TU144751 other downstream 643877 29780326 ~ 29780927 (+) True G107117

Expression Profile