RNA id: XM_022674953.1


Basic Information

Item Value
RNA id XM_022674953.1
length 537
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC111193573
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 29149065 ~ 29159680 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGGTAATGTAGCCCCGCACACTGAACCTATTTTGAGGATATACGGAGCGcatgcgtgagagagagagcgtgtttATAGATCTCTGCTCACAATCAGCAGCAAACATGATCAACTGGCGGgcTTTGGAAAACATTCCTTTGCTGCTGTACATTCTGGCGGCGAAGACGGTGCTGTTGTGTCTGGCCTTTGCTGGAGCTAAAATATATCAGCAGAGGAAGGCAGAAGCAGCTCTGAAGCAGCAAATGGAGATGAAGAGGAGGCTTGCTCAGCAAACGCAGGAACTCCTCGACAATAAGAAGGACGACTGAACACCTGGGGGCACCAGAGAACACGAGCACAGGATGAACACTCTCTTGTGTGCCATAAAAAAAGAAGTGGTTCCAAAGCTGTTGGAGACTCTCCTGAAGAGGCTGAACTATTTTACTGCTTCTCCTCCTGGATCTGAGCTAATCACTGTAGTTTACTGCATTTTGTAATGTTGTATTTAATACTATTTAATACATGGCCTTtgtaaataaaaggattttttaatattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144407 lncRNA upstream 12616 29135975 ~ 29136449 (+) True G106859
TU144405 lncRNA upstream 30319 29118496 ~ 29118746 (+) True G106857
TU144403 lncRNA upstream 35728 29112320 ~ 29113337 (+) True G106856
TU144404 lncRNA upstream 35728 29112375 ~ 29113337 (+) False G106856
TU144400 lncRNA upstream 55625 29079400 ~ 29093440 (+) True G106855
TU144537 lncRNA downstream 163021 29322545 ~ 29323347 (+) True G106954
TU144582 lncRNA downstream 207162 29366686 ~ 29367170 (+) True G106992
TU144583 lncRNA downstream 207842 29367366 ~ 29367681 (+) True G106993
TU144602 lncRNA downstream 244362 29403886 ~ 29404268 (+) True G107012
TU144604 lncRNA downstream 246464 29405988 ~ 29406309 (+) True G107014
XM_022674378.1 mRNA upstream 21424 29125873 ~ 29127641 (+) True LOC111193469
XM_022674951.1 mRNA upstream 283840 28841179 ~ 28865225 (+) False LOC111193570
XM_022674950.1 mRNA upstream 283844 28841180 ~ 28865221 (+) True LOC111193570
XM_022674377.1 mRNA upstream 333557 28811824 ~ 28815508 (+) True LOC111193468
XM_022674952.1 mRNA upstream 357074 28785964 ~ 28791991 (+) True LOC111193571
XM_022674957.1 mRNA downstream 49027 29208551 ~ 29238624 (+) False LOC103024513
XM_022674958.1 mRNA downstream 49027 29208551 ~ 29237973 (+) False LOC103024513
XM_022674956.1 mRNA downstream 49028 29208552 ~ 29241597 (+) True LOC103024513
XM_022674959.1 mRNA downstream 69199 29228723 ~ 29241597 (+) False LOC103024513
XM_022674965.1 mRNA downstream 257698 29417222 ~ 29519834 (+) False LOC103025657
TU144257 other upstream 428785 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 1082082 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 1127018 28014516 ~ 28022047 (+) False G106661
TU143503 other upstream 3779626 25361744 ~ 25369439 (+) True LOC111193563
TU144751 other downstream 620802 29780326 ~ 29780927 (+) True G107117

Expression Profile