RNA id: TU144660


Basic Information

Item Value
RNA id TU144660
length 1942
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G107056
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 29595038 ~ 29597014 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAGTTTTGAAGTCAATAACAATGGGCTCTACTGTGCCCTCCCTGTGTTTGCCGAGGCCTTCTCCAGCACGCCAACCCATCTTCCTCATCAGTAACTCTCCCATGCCCCCGGAGACTGGCGCAGCTCGAAGGAACTGGTCCTGAATGAAGTGGGGACAGATACGGGCAgaagaagacagaaagagagaaagaaggcaGACAAGCAAAGAGGAAATAGTAAGATCTCCCACCAACAGAAAACGGTAAATCATTAATACAATTCTGAAAATTAGGACTGAACATCTACTGGGTATCTGATTGAGTACcacaaacatatattttgaagggggggaaaaaaaacaggaaatataaTTGTTTAATACCCTAGATATAATTTCTCAGTAGATAATACTATAAGTAGATACGTAGTGTAGGAAGTATATTGTGCATTGTTTAAttgcacaaataaatataaactaaaatgataaaagtactATGAAACAAGTAGTTGTACACGgaacaagcataacattatgaccaactCCTGGTTTTTCATATAGTTTCACTTTACAGTCTTTAtgtttctctacatactttattattatcctccttttaccctgttcttcaaaacTCAGAATCCcaaaaaatactgtgtttaatctctctctctgtcctccacactattacacactcctacctacagctgaaacaccttgtagataaagtaaaatccgagacagaagatctgaatctgctgctgcacattttacagttttgaTCATAAGTTCTTAATGTTCTCAATTCTCTAGTTCTTAATCACTGCCCACAAGACACTGTTGGGGAACTATTCTCAGCCAGTAGTGACACTGTtcaagaactccagcagcactgctgtgtcagtGCCACtccagtgctgagaataacgacccaccacccaaaaaaTAATAgctgtggggtcctgagtattgaagaacagggtgaaaggaggaggataataaagcatGCAGAGAAACATATACAGGAATACAGTCAGTAATTATAATAGAACTACATGTTGTCCAATATGAACAGTGGAGGATAGGTTATAAAATGAAAAGgtggtcataatgttatgcttgaacAGTTTATAATTATAGTAAAGTATGTGGAAAAAAGAtcagtatttttaaaattatgtcTATACTAAAAATTATACAGTTTTCCATTGATAAGGCATCAAAATACCACCTTTGCCAAGGTATCAATACCCTTGGTTCAGCTGAAACACACAGAAGAGCATGGCAGAAAGCGTTTATCAGAGCGGACACAAAATCCACATGAATAGAAAGAGGGTGCTGGATGACGTACGTACCTAGGCCCCCATCATCCGCTCTGCATCTGACGAGAATAGAAGGGGCCTGACAGTGACCATGGCAACAAGGCAGCTACAAGGACTGACCCTGCAACAAGTTTCCATATAGAGGGGTGAGAGTTCACAGGTCAGACTGTGAACCCCCACCCCTCTGGCGTTCGTgccacaccacaccccaccaCTGCCCCACCCCCCGCCACCACTCTCACCAGCAGGGTAAAACAGCGCAGCGGTTTGAAACCCTGCACTGAGACATGTTCACACTGACAATGGATGCCGAACCACTGTTAAAACCTCCAATCCATAACACATCAAACATTCCTTAAACCAGTCAATAAATACAAGTAAATCCGAACACATTATCGTTATTATAAAGTTACTTTCCAGAAAGTTTATGCGGGCTTTGAATTTGATTCAAATGAGCCATTTGTGTTATTTAACCAAACTTTTAAGCATTTAGGGGAGTATGTATGTGATACCACAGTGGCATGCAAAAGAttggaatatatatttttaaggcgcattatgcaacacttgtaaggaacaggggtgtcgccaatTTTTCCtgctaattcagcaggtctagcTGCTGGGTGGtaactaagttaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144637 lncRNA upstream 19691 29525655 ~ 29575347 (+) True G107044
TU144604 lncRNA upstream 188729 29405988 ~ 29406309 (+) True G107014
TU144602 lncRNA upstream 190770 29403886 ~ 29404268 (+) True G107012
TU144583 lncRNA upstream 227357 29367366 ~ 29367681 (+) True G106993
TU144582 lncRNA upstream 227868 29366686 ~ 29367170 (+) True G106992
TU144662 lncRNA downstream 244 29597258 ~ 29600584 (+) True G107057
TU144670 lncRNA downstream 18264 29615278 ~ 29621512 (+) True G107064
TU144685 lncRNA downstream 58897 29655911 ~ 29656234 (+) True G107074
TU144686 lncRNA downstream 77082 29674096 ~ 29674334 (+) True G107075
TU144728 lncRNA downstream 87072 29684086 ~ 29684364 (+) True G107094
XM_022674967.1 mRNA upstream 6916 29563196 ~ 29588122 (+) True LOC103025432
XM_015602721.2 mRNA upstream 6916 29563196 ~ 29588122 (+) False LOC103025432
XM_022674966.1 mRNA upstream 36995 29538337 ~ 29558043 (+) True donson
XM_022674965.1 mRNA upstream 75204 29417222 ~ 29519834 (+) False LOC103025657
XM_022674962.1 mRNA upstream 75204 29417523 ~ 29519834 (+) False LOC103025657
XM_022674379.1 mRNA downstream 59523 29656537 ~ 29658422 (+) True LOC111193470
XM_022674973.1 mRNA downstream 247086 29844100 ~ 30451601 (+) True ncam2
XM_022674975.1 mRNA downstream 247086 29844100 ~ 30451601 (+) False ncam2
XM_022674380.1 mRNA downstream 943247 30540261 ~ 30547361 (+) True LOC111193471
XM_022674976.1 mRNA downstream 1064985 30661999 ~ 30668744 (+) True LOC111193577
TU144257 other upstream 874758 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 1528055 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 1572991 28014516 ~ 28022047 (+) False G106661
TU143503 other upstream 4225599 25361744 ~ 25369439 (+) True LOC111193563
TU144751 other downstream 183312 29780326 ~ 29780927 (+) True G107117

Expression Profile