RNA id: TU144768


Basic Information

Item Value
RNA id TU144768
length 518
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G107128
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 30448327 ~ 30455770 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACACTGATCATCAAAGTAGGTAGATATGGAGACTTCAAAAGTTGTTGTTTGGGAGCATATGTGAGGACAACACATAGCTTTAGCCATCCCTGGTGTACtggaagaaagtcgtcactggtgtactaaataacaggtTAGTTCTGGATATAGCCCAGCAAGCCAAACATACATGTACATTTCACCATATACTGAAGCAACACCTTTATTAttatctagcaacaccttagcaaccaacaaatGTTCCATAGCAACACtgctgagctttttttttctgcactctCTGGTTCATCTCGGTGACTTTGACTATATAAGGATTAATATTGTGGATTTACGACCAACCAAAACCCATCCTCGCTTGTAATCATTCCTCATAATGATTCATTCACTTGTGATAAGATGGTGTTGCCTGGCATATGACTGAGAGAACTGATGGGGCGGTGCCTGTGGAACACTTGTAATGATGTAATTTCCtgttgtaaataaatgtgtCCTGGTATAAAACAGTGCTTGTATGAACC

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144907 lncRNA upstream 249383 30198295 ~ 30198944 (+) True G107250
TU144899 lncRNA upstream 280203 30167318 ~ 30168124 (+) True G107243
TU144857 lncRNA upstream 350580 30094167 ~ 30097747 (+) False G107207
TU144928 lncRNA downstream 37231 30493001 ~ 30493706 (+) False G107267
TU144926 lncRNA downstream 37641 30493411 ~ 30528484 (+) True G107267
TU145013 lncRNA downstream 259410 30715180 ~ 30716606 (+) True G107342
TU145072 lncRNA downstream 276898 30732668 ~ 30732900 (+) True G107389
TU145077 lncRNA downstream 287907 30743677 ~ 30744047 (+) True G107394
XM_022674379.1 mRNA upstream 789905 29656537 ~ 29658422 (+) True LOC111193470
XM_022674967.1 mRNA upstream 860205 29563196 ~ 29588122 (+) True LOC103025432
XM_015602721.2 mRNA upstream 860205 29563196 ~ 29588122 (+) False LOC103025432
XM_022674966.1 mRNA upstream 890284 29538337 ~ 29558043 (+) True donson
XM_007238273.3 mRNA upstream 928493 29484542 ~ 29519834 (+) True LOC103025657
XM_022674380.1 mRNA downstream 84491 30540261 ~ 30547361 (+) True LOC111193471
XM_022674976.1 mRNA downstream 206229 30661999 ~ 30668744 (+) True LOC111193577
XM_022674977.1 mRNA downstream 216382 30672152 ~ 30711252 (+) True gart
XM_007237759.3 mRNA downstream 805510 31261280 ~ 31300421 (+) True adamts5
XM_007237758.3 mRNA downstream 856970 31312740 ~ 31319149 (+) True adamts1
TU144751 other upstream 667400 29780326 ~ 29780927 (+) True G107117
TU144257 other upstream 1728047 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 2381344 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 2426280 28014516 ~ 28022047 (+) False G106661
TU143505 other upstream 5078888 25361744 ~ 25369439 (+) False LOC111193563

Expression Profile