RNA id: TU144857


Basic Information

Item Value
RNA id TU144857
length 2166
lncRNA type intronic
GC content 0.41
exon number 2
gene id G107207
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 30094167 ~ 30097747 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cactacATAGGTTCTAGGttcaaaagaaagaaggtaaaaacagacgagtgccttgagttaaaaaaaggagaagacgGAGTTCTTCAAAGTTCTAAGATGCTCTTTTATTGTCTTGAAAAATCAGCCAAGTTCAGCCAGAAGGATCCAATCTTCTGATGAGACAAAGAGTTACATgctcttttatacagtatttgggcAAACCAAAGGTGGGGGCTTTAGGCTCCACCTTTTACCGTTATATAACCATATATCGGTTGAACATAATTGTTCCCAAACATGATCACCTTTAGGGAGGTTTTTTCCGGTCAAGGTTATGGGCATTATGCCATTAGTCCCATAATTGGATTTAATTGTGACCAAATCAACATGgtatagtttttttaaaaatgttgaccTTCACTTTGTGTGCTGTTCCCATGGAGTGGGAGTCTATGTGGCCATCTGGTCTGTCTAATGAATTTAGAGATATGCTGGCCTCTATTTAATGAGTTTAGAGATATGCTCCTCAGTCATCATATAGCATGTTCCGGGGAGCGAGCCAATTATGTCCTGTTATCTTATAACAGCTGTCTCTCAGATATATTAGGTACAGGCCTAAACCTGTTACGGGAGAGAGCAAACAGAGGATGAGCGAACTTAATGAACTTGCTCATATGAGGCCAGTGTGCTTCAGTATATGAAATGTACACATATGCTTCTTCAATATCCTAAATTAGGCCCCACATTCCCCCCTTCCGTGGGATTTAGTCCCACGGAACAACGATGGGATAATTTGGTATTTTAGGCTGTCTTTCAGAGCATAAAGACTTTAGTagagttttaattattttattgtaagtgAGTTACGTGCTCGTAAATATTTTGAGTCCCAAGTCCATTTTTAAACCACATTGATTTGGCACATTCTTATGTATATGGGTGAGTAAACATGACAGAATAGTAAGAAATACATGGTTATATATTCAGCTACATGACaccaaaacaaatgaataaaggtGGTGTAATTACTACAAAAGGTATGAAAATGCACACTTTCAAATGGATTACATAATGGATAACATGATTGGATTACATATGATAGATATGTCGAATACATGGTTAAGTtccatattaatatattgtccaCAAGGAGGGTCAAACAGGTCCGAATTACGCATCTCAAGTATTGAAATGCTTTTGTCAAAAGTGACATAAGTATCTGATTAAACAACCCCACATTCCCCTTGTCTCCTCGCTGGTAACTGGCGAATAATTGAGCATAGAAAGGCACGTCAACCATGGCACCTGGCAAAGCAACCCGACAAGGCCCCACATGCAGTCGCATACCTCAAAATCCAAGGGTTAAGGCATACCACCCCAGCACAAAGGCAAGGATGGCAAACCCCCCTAGAGCCAAGGCGCTATACCGATGGGGAAATACCAGTCTGTTTGGTCGCTGCCTGGAAAAGCTACCTGATAGGTCCCCTATGGGAATGTGTAGCGTTACCAAGACAATGCACAGTCAAGGGGCTCCGCCTCTTCAGAGGAATTTGGGAACACGAGCAGTAGGTAAGAAGGATCCAAGGAAGCATGTCCCCCCTTAGGCACAATATACATATGtaactgtaaaacatttcacCAGATAGTGAAAGGCACACTTGTAGAGGAATAAACACAACCAATTATTATGGAACCTTGGGACAGGTGAGAAACAAGGGTGTAGGATTAAATAGTCCATGTACATGGAGAAACATTCAAAGGCAAAgggataaaaacacaaaaccaaatGGTAGTTGAAGACGTCTTCTGCCTTTTGTGACTTTGCGCCACGTGGAAAGGCACGGTGTAGGTCAAGGGAGAGGTTACTAGCACTTCACCTTGACCCGGAGGGCGCAGTTGCATTATTTGTCCGGGGACATGCCCTGGCCCATTTGACAAATAACTTCAAGTCCCGCTGATGAGTCAACAGACGCATGGAAAACAGCATATTGTCCAGAGATAGATGAAACAGTTCGTTCAATCAACAATCGCAAACAAGGTACAACACAACATGCCACAAACATCAAAATCAAGATGACATATAAAAGCATCATAGCCAATCTCATTAAAAGAGCTTTCCATTGACCAGAAAATAGCCAGTTAAACCAGGAGTCTTGTGCAGCTTGAGTGTTTCTAACATGTTCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144819 lncRNA upstream 11756 30018964 ~ 30082411 (+) True G107175
TU144828 lncRNA upstream 58918 30031953 ~ 30035249 (+) False G107181
TU144827 lncRNA upstream 58918 30034467 ~ 30035249 (+) True G107181
TU144823 lncRNA upstream 70523 30022901 ~ 30023644 (+) True G107178
TU144764 lncRNA upstream 262199 29831737 ~ 29831968 (+) True G107127
TU144899 lncRNA downstream 69571 30167318 ~ 30168124 (+) True G107243
TU144907 lncRNA downstream 100548 30198295 ~ 30198944 (+) True G107250
TU144919 lncRNA downstream 303879 30401626 ~ 30464931 (+) True G107261
TU144768 lncRNA downstream 350580 30448327 ~ 30455770 (+) True G107128
TU144928 lncRNA downstream 395254 30493001 ~ 30493706 (+) False G107267
XM_022674379.1 mRNA upstream 435745 29656537 ~ 29658422 (+) True LOC111193470
XM_022674967.1 mRNA upstream 506045 29563196 ~ 29588122 (+) True LOC103025432
XM_015602721.2 mRNA upstream 506045 29563196 ~ 29588122 (+) False LOC103025432
XM_022674966.1 mRNA upstream 536124 29538337 ~ 29558043 (+) True donson
XM_007238273.3 mRNA upstream 574333 29484542 ~ 29519834 (+) True LOC103025657
XM_022674380.1 mRNA downstream 442514 30540261 ~ 30547361 (+) True LOC111193471
XM_022674976.1 mRNA downstream 564252 30661999 ~ 30668744 (+) True LOC111193577
XM_022674977.1 mRNA downstream 574405 30672152 ~ 30711252 (+) True gart
XM_007237759.3 mRNA downstream 1163533 31261280 ~ 31300421 (+) True adamts5
XM_007237758.3 mRNA downstream 1214993 31312740 ~ 31319149 (+) True adamts1
TU144751 other upstream 313240 29780326 ~ 29780927 (+) True G107117
TU144257 other upstream 1373887 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 2027184 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 2072120 28014516 ~ 28022047 (+) False G106661
TU143505 other upstream 4724728 25361744 ~ 25369439 (+) False LOC111193563