RNA id: TU144899


Basic Information

Item Value
RNA id TU144899
length 356
lncRNA type intronic
GC content 0.37
exon number 2
gene id G107243
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 30167318 ~ 30168124 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagagagagagatacagagagatacagagagagagagagagagagagagagagagaccaatgactggagtgagagaaagagctgcaattaaaaaaatgtctagtggaagtgatgcacggagacagacaccgattctccttatgaacattttcatcacctggtaagaaacccacaattacAGTATCATGAgtaaatgtctacaatgagcagtttaaagaacgtatagtgatttctagcttgtagtgtgaaaaaaagtatttatttgaatatctcaccaaaaaagtaaaatgaactgaactttgaactagttcagaattaaaattgtgaactttgaacgtgaactgttcactttgagc

Function

GO:

id name namespace
GO:0022857 transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144855 lncRNA upstream 69571 30094167 ~ 30097747 (+) True G107207
TU144856 lncRNA upstream 69571 30094167 ~ 30097747 (+) False G107207
TU144857 lncRNA upstream 69571 30094167 ~ 30097747 (+) False G107207
TU144859 lncRNA upstream 69571 30094167 ~ 30097747 (+) False G107207
TU144860 lncRNA upstream 69571 30094167 ~ 30097747 (+) False G107207
TU144907 lncRNA downstream 30171 30198295 ~ 30198944 (+) True G107250
TU144919 lncRNA downstream 233502 30401626 ~ 30464931 (+) True G107261
TU144768 lncRNA downstream 280203 30448327 ~ 30455770 (+) True G107128
TU144928 lncRNA downstream 324877 30493001 ~ 30493706 (+) False G107267
TU144926 lncRNA downstream 325287 30493411 ~ 30528484 (+) True G107267
XM_022674379.1 mRNA upstream 508896 29656537 ~ 29658422 (+) True LOC111193470
XM_022674967.1 mRNA upstream 579196 29563196 ~ 29588122 (+) True LOC103025432
XM_015602721.2 mRNA upstream 579196 29563196 ~ 29588122 (+) False LOC103025432
XM_022674966.1 mRNA upstream 609275 29538337 ~ 29558043 (+) True donson
XM_007238273.3 mRNA upstream 647484 29484542 ~ 29519834 (+) True LOC103025657
XM_022674380.1 mRNA downstream 372137 30540261 ~ 30547361 (+) True LOC111193471
XM_022674976.1 mRNA downstream 493875 30661999 ~ 30668744 (+) True LOC111193577
XM_022674977.1 mRNA downstream 504028 30672152 ~ 30711252 (+) True gart
XM_007237759.3 mRNA downstream 1093156 31261280 ~ 31300421 (+) True adamts5
XM_007237758.3 mRNA downstream 1144616 31312740 ~ 31319149 (+) True adamts1
TU144751 other upstream 386391 29780326 ~ 29780927 (+) True G107117
TU144257 other upstream 1447038 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 2100335 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 2145271 28014516 ~ 28022047 (+) False G106661
TU143505 other upstream 4797879 25361744 ~ 25369439 (+) False LOC111193563

Expression Profile