RNA id: TU144926


Basic Information

Item Value
RNA id TU144926
length 305
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G107267
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 30493001 ~ 30528484 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTGGGGGGCTGGTTGAGCGTGGCTGGTATGCCGACGGGAGTTTATTGAGCTGAATATTAGCATTTGTGGTGGTAGCTGCCAATCCACCGTTAACTCCTACCAGTGTAGCGTGTAAatagtttgtatatatattgtaaatttcgttttgttttcatttttgtttttgggttCGGGTGCTTAATTTGTCACAATCAACACTTCAAAAGGGATTCTTACCTGGTTCCGGACTGTTTTTGCGTCTCTGCCTCACCTCTCTCCGGTAACCTCCTGACCACTTgtcctcacactaccacaAAGGCTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144919 lncRNA upstream 28480 30401626 ~ 30464931 (+) True G107261
TU144768 lncRNA upstream 37641 30448327 ~ 30455770 (+) True G107128
TU144907 lncRNA upstream 294467 30198295 ~ 30198944 (+) True G107250
TU144899 lncRNA upstream 325287 30167318 ~ 30168124 (+) True G107243
TU144859 lncRNA upstream 395664 30094167 ~ 30097747 (+) False G107207
TU145013 lncRNA downstream 186696 30715180 ~ 30716606 (+) True G107342
TU145072 lncRNA downstream 204184 30732668 ~ 30732900 (+) True G107389
TU145077 lncRNA downstream 215193 30743677 ~ 30744047 (+) True G107394
TU145079 lncRNA downstream 216947 30745431 ~ 30745631 (+) True G107396
TU145080 lncRNA downstream 232186 30760670 ~ 30790277 (+) True G107397
XM_022674973.1 mRNA upstream 41810 29844100 ~ 30451601 (+) True ncam2
XM_022674975.1 mRNA upstream 41810 29844100 ~ 30451601 (+) False ncam2
XM_022674379.1 mRNA upstream 834989 29656537 ~ 29658422 (+) True LOC111193470
XM_022674967.1 mRNA upstream 905289 29563196 ~ 29588122 (+) True LOC103025432
XM_022674380.1 mRNA downstream 11777 30540261 ~ 30547361 (+) True LOC111193471
XM_022674976.1 mRNA downstream 133515 30661999 ~ 30668744 (+) True LOC111193577
XM_022674977.1 mRNA downstream 143668 30672152 ~ 30711252 (+) True gart
XM_007237759.3 mRNA downstream 732796 31261280 ~ 31300421 (+) True adamts5
XM_007237758.3 mRNA downstream 784256 31312740 ~ 31319149 (+) True adamts1
TU144751 other upstream 712484 29780326 ~ 29780927 (+) True G107117
TU144257 other upstream 1773131 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 2426428 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 2471364 28014516 ~ 28022047 (+) False G106661
TU143505 other upstream 5123972 25361744 ~ 25369439 (+) False LOC111193563

Expression Profile