RNA id: XM_022674395.1


Basic Information

Item Value
RNA id XM_022674395.1
length 1571
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC111193487
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 26638967 ~ 26643210 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGTCGCTGATGATGTCATCACAGCTATATATACTCATTCTTCTGGAGAGCAGCAGAGAAACGGAGGGAGATTTGAAGAGAGAGGACATGTTTGACCTGGATAAAATGGACTTTTCTGCTCTAATGGCGAAACCAAAAGGAACAAAGGTGTTTGTGCCTGATAAATGTAAGGTGCAGTTCTTCCGGGGCAAACTGGGACAGAGTcttTCTCCTGATAAACAGGATTGTGACTTCGGAGACCCTAAAATGTCCAAGAAACTCGGGGAATACAACTGCCTGCACGATAAATACCTGAAGAAGTTCTTCAGAcatccaatgaaaaagaagcaaCTCATAAAACTTGGCATAATTTCTCAggatggaaaagTCCGGTGCTCCGTAAAGGAATTTAACGAATACGTTGAGCACCTGAAGAGCACCCCACTGAAACAGGATACATCAGAATTCAAGCAGCCCAGCTTACAAATGACCTGCCGGTTCAAGGGCTCCAGCCGCCCGGAGAAGAAGataaagaaagagactgAGGAGCTGAGGCTGATAGACCTGGAGGAGGAGGATCATGTTTCAGTTGAGGACCTAAAACAAACTCCTAGAAAAGAAAAGGTGGAGGATATATCAGAATTCAAGCAGCCCAGCGTACAAATGACCTGCCAGAGCAAGGGCTCCAGCCGTCCGGAGAAGAAGGAGCGGCGCATGAAACAAAAACTAACCAATCCGGATGTTAAGGATGAACGCACATTACTCGCACATTCCTACACATTAgagcatgatgatgatgatcaggTTTTTGATTTCAAGACTGAGAAAGAGCCTGAGGAGCTGCGGCTGATAGACCtcgaggaggaggagcaggaggaggaggaggagagcttCCAAACCGAGGTGGCTGATGTTTTAGTGGAGGACATAGACCAAACTCCTAGAGAAGAAACGGTGGAGATGACAACATCAAAGCCAATCCTCTCACCTGAAACTGAGAAGAagctgaagaaaaagaaatcttcCAGTTTGACTTGGGTAAATGTCCAAGAGTCATCCAGCACCCAGGAGAATATGGAGGAAGCTTCTAAAGAGGGTGACAGCCGTGGCTCAATCTGGTCCATCTTTAAGAAAGTCTGGAAGGCAGTAAAGCGCCCCAAATCAGCTCCTCCTGCCATCtaattttccccattttttccCACCCCCACTTTCacttcttttttatattaatcataAGATTTGGTCAATGCAATCCATATTAATCTATTGTATTGTATCAAATTGTCCGCCATATTGTCAAATTCGCAAGCGTCTGAAGTCTGGAATTTAGCTCCATAGTCGTTATGTCAATCCAGACCCAGTGTAGGCTTATTTAAAATCAAAACTACATTTAGAAACTACATTGCTCTCAGGCTCTCAGAGCTATATGAGCTGAGCTCCATCCTTATAGATGTTGAGCTCTTTTAGTATTAGttcgttttatatatatataaaattagtcCACACTTGAACAATTGTTGCATCATTTTAATTCgcctaatatatttaatatcatgTAGGTAGTTGCTCGTTGACTGCTCAGTATTTACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143847 lncRNA upstream 186519 26452208 ~ 26452448 (+) True G106486
TU143837 lncRNA upstream 328985 26309729 ~ 26309982 (+) True G106476
TU143826 lncRNA upstream 353551 26284892 ~ 26285416 (+) True G106466
TU143794 lncRNA upstream 410278 26223136 ~ 26228689 (+) True G106446
TU143777 lncRNA upstream 467166 26166116 ~ 26171801 (+) False LOC103037236
TU143910 lncRNA downstream 126404 26769614 ~ 26769877 (+) True G106541
XR_002650606.1 lncRNA downstream 145230 26788440 ~ 26789793 (+) True LOC111193569
TU143928 lncRNA downstream 926777 27569987 ~ 27570191 (+) True G106555
TU143930 lncRNA downstream 928126 27571336 ~ 27571646 (+) True G106557
TU143943 lncRNA downstream 940167 27583377 ~ 27624701 (+) True G106562
XM_007232550.3 mRNA upstream 123729 26511121 ~ 26515238 (+) True slitrk1
XM_022674934.1 mRNA upstream 384090 26250173 ~ 26254877 (+) True LOC111193566
XM_022674365.1 mRNA upstream 390620 26245239 ~ 26248347 (+) True LOC103039973
XM_022674363.1 mRNA upstream 445823 26188965 ~ 26193144 (+) True LOC103039357
XM_022674937.1 mRNA upstream 468844 26154417 ~ 26170123 (+) True LOC103037236
XM_022674939.1 mRNA downstream 944839 27588049 ~ 27604231 (+) True atic
XM_022674942.1 mRNA downstream 1086303 27729513 ~ 27739098 (+) True LOC103046391
XM_022674367.1 mRNA downstream 1101878 27745088 ~ 27758097 (+) True LOC111193461
XM_022674943.1 mRNA downstream 1116002 27759212 ~ 27768267 (+) True arglu1
XM_022674368.1 mRNA downstream 1158874 27802084 ~ 27808084 (+) True LOC103047315
TU143503 other upstream 1269528 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other upstream 1269528 25361744 ~ 25369439 (+) False LOC111193563
TU143375 other upstream 2225869 24411208 ~ 24413098 (+) True G106146
TU143241 other upstream 2649375 23987207 ~ 23989592 (+) True G106036
TU143216 other upstream 2715196 23915635 ~ 23923771 (+) True G106017
TU144092 other downstream 1371306 28014516 ~ 28022047 (+) False G106661
TU144107 other downstream 1423142 28066352 ~ 28066983 (+) True G106673
TU144257 other downstream 2073392 28716602 ~ 28720280 (+) False LOC103027743
TU144751 other downstream 3137116 29780326 ~ 29780927 (+) True G107117

Expression Profile