RNA id: XM_022674951.1


Basic Information

Item Value
RNA id XM_022674951.1
length 2184
RNA type mRNA
GC content 0.38
exon number 8
gene id LOC111193570
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 28841179 ~ 28865225 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACTATTTCCTCCATTTGTCAGAGAAGTGCTTTAGAAGAAAAATGAAGTCCAGAAGCAGTGCATCCCTCTTCCTCCTCTGCGCTCTGATTATTAACAACTTTACAGACTCCAGTGCATGTGACTTCACTGTGGCAGTAGGGAGCCCTGTTACCATTAACCTTGGCCTTGATCAAACTGATGAGCTTGTATGGAATCACAACTCTCAGAGAGTGTTTAAAGGACTGGTTATTACAGCTccaacaaaactaaacaacGTGAAGCTGACCACTGATGGTTCCCTTATAATCAATTCTGTAAAAATGAAAGATAATGGCGACCATGAGTTTGAAGTTTTCCTTTCGAATGGCAGATCtaaagcaaaaaaatccatCACTCTTTGTGTTCATGAAAAGCTCATTAAGCCAACAGTGGACATCACATGTATAGATGGGATCCCTTCCATCAGCTGTGAAGTTGAAGGCAAAACCGGACTGACCTTCAGTTGGTataaaaatgaggaaaaaatggatgaaaattCTGCAAGTCTAAGAAACATTGAGAGAGATCAGGACTATGAGTGTGCTGTGGAACAACCCATTCCAAGTGAAAAGAGTAATAAATTCAGACTAAGTACCACTAAATACTCCAGTGCATGTGACTTCACTGTGGCAGTAGGGAGCCCTGTTACCATTAAGCTTGGCCTTGATCAAACTGATGAGCTTTTATGGAGACACAACTCTAAGAGAGTGGTTAAAGGAGTGGTTAGCACATTaccaacaaaactaaacaacGTGAAGCTGACCACTGATGGATCCCTTATAATCCATTCTGTAAAAATGGAAGATAATGGCGACCATGAGTTTGAAGTTTTCCTGTCGAATGGCAGAtctaaagcaaaaaaatcaaTCACACTGTGTGTTTATGAAAAGCTCCTTAAGCCAACAGTGGACATCACATGTATAGATGGGACTCCTTCCATCAGCTGTAAAGTTGAAGACAAAACCGGACTGACCTTCAGTTggtataaaaatgagaaaaaaatggatgaaaattCTGCAAGTCTAAGAAACATTGAGAGAGATCAGGACTATGAGTGTGCTGTGGAACAACCCATTCCAAGTGAAAAGAGTAATAAATTCAGACTAAGTACAACCGAAGACTCCAGTGCATGTGACTTCACTGTGGCAGTAGGGAGCCCTGTTACCATTAAGCTTGGCCTTGATCAAACTGATGAGCTTGTATGGAGACACAACTCTAAGAGAGTGTTTAAAGGAGAGGTTAGCAGATTACCAACAAAACTAAACATCGCGAAGGTGACCAGTGATGGATCCCTTGTAATcagttctgtaaaaaaagaagataatgGCGACCATGAGTTTGAAGCTTTTCTTTCCTCTGGCAGATCTAAACCAGAATCGAAAAAATCTGTCAAACTGTGTGTTCATgaaaagcCCCCTAAGCCAACAGTGGACATCACATGTATAGATGGGATCCCTTCCATCAGCTGTGAAGTTGAAGACAAAACCGGACTGACCTTCAGTTGGTataaaaatgaggaaaaaattGATGAAACTTGTGCAAGTCTAAGAAACATTGAGAGAGATCAGGACTATGAGTGTGCTGTGGAACAACCCATTCCAAGTGAAAAGAGTAATAAATTCAGACTAAGTACCACTAAATatgAAGAAGAGCTCATGCTAAACAGCTCTCCACACTCTCCTACACCTCTCCAGACTCAGCAAACATAGAAGATTAATGCAGGATTTCATCCAGCTCCTCCCCAACACCCTAAAATCTCCAATTATGAAATACTTTTGAACACATCTGTACATGCAGCtaaaacagggagcctagtgcatctcacatttatcaacattaacatttataggactcctaagcttttgttcttaatgacaTTGCTTTTACTTCTATACTTTTTAAaccacttttacacttttacttgagttaaaagcttaagaaatattttaaactctagtatctttACTTCTACTGgaataacacattttttgttttgatgcTGCATACTATATAATGCATTCTAAAGTttgaattcttctttttttaatcagtccTGTGATTTAGTGGTAAATGAGAAATTGTACAAACACTTGTGATGTTATTTCtacaatatgattttttttttactatgcaatgttttttcctgtttaagaaaataaaggttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144326 lncRNA upstream 27117 28809335 ~ 28814062 (+) False G106803
XR_002650609.1 lncRNA upstream 27128 28813405 ~ 28814051 (+) True LOC111193572
TU144330 lncRNA upstream 28247 28809335 ~ 28812932 (+) False G106803
TU144297 lncRNA upstream 62699 28778182 ~ 28778480 (+) True G106800
TU144296 lncRNA upstream 64142 28776546 ~ 28777037 (+) True G106799
TU144349 lncRNA downstream 88361 28953586 ~ 29063678 (+) True G106817
TU144383 lncRNA downstream 107507 28972732 ~ 28974394 (+) True G106838
TU144366 lncRNA downstream 185210 29050435 ~ 29052453 (+) True G106822
TU144361 lncRNA downstream 187306 29052531 ~ 29055183 (+) True G106819
TU144359 lncRNA downstream 192094 29057319 ~ 29058905 (+) False G106819
XM_022674377.1 mRNA upstream 25671 28811824 ~ 28815508 (+) True LOC111193468
XM_022674952.1 mRNA upstream 49188 28785964 ~ 28791991 (+) True LOC111193571
XM_022674375.1 mRNA upstream 117353 28703067 ~ 28723826 (+) True LOC103027743
XM_022674374.1 mRNA upstream 138258 28702012 ~ 28702921 (+) True LOC111193466
XM_022674373.1 mRNA upstream 144083 28692844 ~ 28697096 (+) True LOC111193465
XM_022674378.1 mRNA downstream 260648 29125873 ~ 29127641 (+) True LOC111193469
XM_022674953.1 mRNA downstream 283840 29149065 ~ 29159524 (+) False LOC111193573
XM_022674957.1 mRNA downstream 343326 29208551 ~ 29238624 (+) False LOC103024513
XM_022674958.1 mRNA downstream 343326 29208551 ~ 29237973 (+) False LOC103024513
XM_022674956.1 mRNA downstream 343327 29208552 ~ 29241597 (+) True LOC103024513
TU144257 other upstream 120899 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 774196 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 819132 28014516 ~ 28022047 (+) False G106661
TU143503 other upstream 3471740 25361744 ~ 25369439 (+) True LOC111193563
TU144751 other downstream 915101 29780326 ~ 29780927 (+) True G107117

Expression Profile