RNA id: XM_022674973.1


Basic Information

Item Value
RNA id XM_022674973.1
length 4166
RNA type mRNA
GC content 0.49
exon number 17
gene id ncam2
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 29844100 ~ 30451601 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaGCGTCGCGCGCTCAGAGCTGGTACAGATCTCAGCTCTGCAACACGAGCACGAGccgctctgtctgtctgtatctctcgcGCTGAATCCGCTGCTGCTGAAGATGCTCCTCCAGTCCGCCCGCGTGCTGGGATTGCTGGGATTGCTGGTCTGCGGCAGTCACGctGTTCTTCAGGTGTCTATATCCCTCAACAAGGTGGAGCTGAGTGTTGGAGAGTCCAAATTCTTCACCTGCACAGTCATTGGTGAGCCGGTCAGCATCAACTGGTTCAACCCTCAAGGCGAGCGAATTATTTCCAACCAGAGGGTCGTGATGCACACGGAGGGCGTCCGGTCCAGACTCACCATCTACAACGCCATCATCGAGGACGCTGGGATATACCGGTGCCAGGCGGTGGACATCAAGGGACAGACTCAGGAGGCCACAGTGGTGCTGGAAATATACCAGAAGCTGACCTTCCGGGAGGTGAAGACGCCTCAGGAGTTTCGACAAGCAGAGGATGCCGAGGTGATGTGTGACGTGATCAGTTCTCCTGTCCCTGCCGTCTCCTGGTTCTATAAGAACCGAGAGATCACGCCGGAGAACAGCAACAGGCTCCAGGTACTTCCCAACAACAACCTCCAGATCCTGAAAGTGGCCAAAGAGGATGAGGGGGTGTACCGCTGCGAGGCGCGAGTGGAGGCCCGAGGCGAGATCGATTTCCGGGACATCGTGGTGGTGGTAAACGTTCCCCCTGTGCTGTCAGTTCCTCAGGAGGCCTTCAACGCCACGGCTGACTACCAGGAATCCGTGACATTTACCTGCATCACGTCGGGCTCTCCTGACCCTGAGGTCACATGGCTCCGGAAGGGACGACAAATCGAGAGATCTGAGCAGTACATGTTCAACATGCTTGAAGGAGGCAAGAGCACACTCACCATTAAGAACATCAGACAGGGGGACGGAGGCCCGTACACCTGCAGAGCCAGTAACAAGGCTGGAAGCAAGGAGAGCGAGATTCTACTCAAAGTGTTTGTTCAGCCGCACATCACTCATCTGAGGAACGTGACGGCGGTGGAGGGCAGCGCTGCGATGATCTCCTGCACCGCTGAGGGAGAACCTCTGCCTGAGATCTCCTGGAGGAGAGCCAGCGATGGACAGACCTTCTCTCACGGGGACAAGAGCCAGGATGGAAGAGTGGAGGTTCAAGGGCGTCACGGCAAGTCCATGCTGACCATCAGCGGAGTCCGTCTGTCTGACTGGGGTCGCTTTGATTGTGAAGCTCTCAGCAGAATCGGAGGCCATCAGAAAAGCATGTTCCTGGATATTGAGTATGCTCCAAAGTTTCAGATCAATCACACCATCTTCTACTCGTGGGAGGGGAATCCAGTAAACATTAGCTGTGACGTGATGTCCAACCCTCCAGCCACCATGCTGTGGAGACGAGACCGGTTCACCATCTCCAACGAAGGAACCAGCAACACCCGCATCCACACCGCAGAGGGAAGATCATTACTGGAGGTCACCCCGATGTCCGACCGGGATTTTGGACGCTACAACTGCACGGCCAGGAACAACATCGGCGCTCGATATCAGGAGTTTATTTTAGCACAGGCAGATGTTCCGTCCAACCCGTATTCTGTGCGATTGTCCTCGGTGTCTCAGCGCATCGCTTCAGTCACCTTTATGAAGCCTGACTCTCACGGCGGAGTTCCCATCGGACACTATATCGTCAACTACAAGGACCAGAGTTCCCAGGAGTGGAGGACGGTGAAGTCACATGGTGTACAGAcGATGGTTCTCCTGACCAGCCTGGAGCCCAACACGACCTATGAGGTCAGAGTGGCGGCCGTGAATGGAAAAGGTCAAGGGGAGTACAGCCacacggagatcttccagacgtTACCCATCCgAGAGCCCAGTCCCCCTACAGTGCACGGCCAGAGAGCTGTGGGAAAAGCCTACAGACTGGGACTGGTCAAACAGGATGATGGTGGGATGCCCATCGTGGAATACATTATAAAATACAAGACAGATAAGGAGGAGCAGTGGATGACTAAACTGGTTCCAGGTATGAATGACTTCACTGTCCTGCAGCCGCTGCAGTGGAACACGCGCTATAACGTGGAGATCACGGCCCGCAACGTTAAAGGCCTTTCAGAACCCACGTATTTCCAGTTCGTCATGCCACAGAAACCAGACATCACAGCAGACTCCCTGTTCAGCGGCCTGGGCTTGGGCGCGGTGGTGGGTCTGGGGCTGGCCGGACTGCTGCTCCTGCTGGTGCTGGTGGACGTCAGCTGCTTCTTCTTGCGTCAGTGTGGTCTGCTGATGTGCATCTCCCGAAAGCTCTGCAGCAAGAAGACCGCCACCAGCAGTAAAGGAAAAGAGCTGGAGGAGGGAAAAGCGGCCTACCTaaaactcCCTCTCAAAGAAGAAAACGGAAAAGACGTCCTAAAGCCAGACCTGATCGAGATCAAGGTGCACAGCGACAACAGCATCCACACAAAACAGGATGACAGCAAAGCGTAATGAGGGGAAGGGGGGGCGGAGAAGGACATTGTTTGGGAGGACGTTCCGAGCCTGGCCCGAACAAGACCAAaacaaccagaaaaaaaaaaaaaaacgagagaagAAAAACGCAAAGAAGCGAAAAACGGAATCCTCGGAAGCTGAACGGATGACTGAGGGCGCGCACACACACGGGCCTCTGTAAATATGTTCAAATATATAAAGAGAGTTGAgtttttattgtgataaattaatTGTCCTTTCTATTTGAATCGGCTCCAGCTGAAGGCACTTGATTTTTAAGtgacttttgttcttttttttagaccctttttctttgattttgctctCGGTTTTGGTAGGACTTTATTCATGCTTATGTTCCTTCGTTCTTTACCAATTGAAACATGTTGGGTCTCCAAGAAAACTCTGAAGAATGGAGCTTTTAAGGGTTGTGTGCCAGATTGGACGTACCACCCAACTAAACGTCTTGTCTACATTTCTACAACAGCATGTGGTCTAAGGCATGGACGTGTGCTTCAAGACAGTAGCGTTGATGTTCCTGCTGGTTTGGCCATACTCTACCTGTGCATCTGGATTTAGTGACCATCcttcaacctttattttgaggAACCAGTTGAGCAATGAAGGACAGACCAACACAGGAGACATTAAAAGACATCAGTTCGGTAACACTTCTTATGAATCCTGTAtgaattataatgcattaaatagcaaacataacatttttacagtaactGTCATAAGCTAGTTAAATACCATTTAAGTTAAAAGGattgtaaaattacaataattcaCTCTGGAAATACAATACAgcttaatactgtataataggAGTTGTAATAGAGTATTACAgcttttgtaataaataaatctattataatactgtaattacACAGCATGAAGTCACACTTTGCTGCAGTAAAGAAAATAGTAACTTATTCTTATGGCCTAAAACACTCACTGTGTCCAGGCAGTCAATTACCATTATGTAACATACTGAGTATCTAAATAGCCATGGTAGAATAGCTATGGTAGGcaaaactacacactgatggtgcaTAGTAAAGGGTGCTAGGTcacgcccattatgcaaataaaggaTGTCAGAGGGCCAATAGGAAAGATGACATTTTTGTGTAACTACAAAATATTAGAGTTTCAATTTAGGTGATACTTACTCAAAGTATTGGGTGGgtgcagagtggtccagtggtctaaatcCCAgtgtttgaatcccagtcatgcagcttgacaTCAGCTGTCGGAGTCCTGAAAGAGCAAAAATTGACCTTgttctttctgggtgggtacagtagatggcgctctttcccctcatcacttctagggtgatgttgatcagcacaaggctgcatctgtgagctgatgtatcaaaaccaaTATCTTTTGTTTGTGCATTTGTTATACTTAAATggttttcagattatcaaacaaactttctgtctgacaacatgaagcagctgaaagatcttaaaaaacaacacattattaTATCCCGATCTGAAAATattcaaaaacagataagaaaacaGGGTCATTGATCAGCTATCAGTCTagaaaagtcatttctaaagctttgagactccaaagaaccacagtgagagctattattcactaatggagaaaacatgga

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06491 NCAM, CD56; neural cell adhesion molecule

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144764 lncRNA upstream 12132 29831737 ~ 29831968 (+) True G107127
TU144758 lncRNA upstream 35285 29808575 ~ 29808815 (+) True G107121
TU144747 lncRNA upstream 76106 29767531 ~ 29767994 (+) True G107113
TU144745 lncRNA upstream 90860 29752736 ~ 29753240 (+) True G107111
TU144740 lncRNA upstream 123233 29720626 ~ 29720867 (+) True G107106
TU144928 lncRNA downstream 41400 30493001 ~ 30493706 (+) False G107267
TU144926 lncRNA downstream 41810 30493411 ~ 30528484 (+) True G107267
TU145013 lncRNA downstream 263579 30715180 ~ 30716606 (+) True G107342
TU145072 lncRNA downstream 281067 30732668 ~ 30732900 (+) True G107389
TU145077 lncRNA downstream 292076 30743677 ~ 30744047 (+) True G107394
XM_022674379.1 mRNA upstream 185678 29656537 ~ 29658422 (+) True LOC111193470
XM_022674967.1 mRNA upstream 255978 29563196 ~ 29588122 (+) True LOC103025432
XM_015602721.2 mRNA upstream 255978 29563196 ~ 29588122 (+) False LOC103025432
XM_022674966.1 mRNA upstream 286057 29538337 ~ 29558043 (+) True donson
XM_022674964.1 mRNA upstream 324266 29417523 ~ 29519834 (+) False LOC103025657
XM_022674380.1 mRNA downstream 88660 30540261 ~ 30547361 (+) True LOC111193471
XM_022674976.1 mRNA downstream 210398 30661999 ~ 30668744 (+) True LOC111193577
XM_022674977.1 mRNA downstream 220551 30672152 ~ 30711252 (+) True gart
XM_007237759.3 mRNA downstream 809679 31261280 ~ 31300421 (+) True adamts5
XM_007237758.3 mRNA downstream 861139 31312740 ~ 31319149 (+) True adamts1
TU144751 other upstream 63173 29780326 ~ 29780927 (+) True G107117
TU144257 other upstream 1123820 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 1777117 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 1822053 28014516 ~ 28022047 (+) False G106661
TU143503 other upstream 4474661 25361744 ~ 25369439 (+) True LOC111193563

Expression Profile