RNA id: XM_007234961.3


Basic Information

Item Value
RNA id XM_007234961.3
length 7138
RNA type mRNA
GC content 0.41
exon number 18
gene id scyl2
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13396485 ~ 13422065 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACGCTTTTACAGGTGTTTTGATGTAGCTGCTCTGGGCTGAGGGCTGCTGGCGCTTACACTGACAGTTAACGTTATACAGCCCTGAAATTGACGTCGTGGGATAAATTGCGCAGTCACCTCATCCCTGATAAAGGTTGACTGCTGGCTACACTATGGAGTCCATGCTTAATAAGCTAAAGAGCACAGTCACCAAAGTGACTGCTGATGTGACTAGTGCTGTCATGGGAAATCCAGTGACACGGGAATTTGAAGTTGGCCGACACATTGCAAGCGGGGGACCGGGGATGTGCTGGAGGATCTACAACGGCACTAAGAAATCCACAAAACAGGAAGTAGCAGTCTTTGTATTTGACAAGAAGATTGTTGACAGATACCAGAAGTTTGAGAAGGACCAGATCATCGATTCACTTAAAAAAGGAGTTCAGCAGCTAACTCGCTTACGACACCCACGCCTTCTTACAGTTCAGCATCCTTTGGAGGAGTCGAGggacTGCCTGGCATTTTGCACAGAGCCAGTGTTTGCTAGCCTGGCTAACGTGCTGGGCCAGTGGGACAATCTGCCAAGCCCTGTTCCCACAGATATCAAAGACTACAAACTCTACGATGTTGAGACCAAGTATGGTTTACTGCAGATCTCAGAGGGCCTGTCATTCCTGCACAGTGGAGTAAAGATGGTACATGGTAACCTGTGTCCAGAGAACATCATCCTAAATAAAAGTGGAGCCTGGAAGATCATGGGCTTCGATTTCAGCATCTCTTCCAGCAACCCATCAGATGCTGAGCCAAAATACGTCTGTAAGGAGTGGGACCCCAACTCGCCCCCTCTCTGTCTCCCCAACCCGGAGTATGTGGCTCCGGAATACATCCTGTCAGTTAGCTGTGACTCCGCCTCTGACATGTACTCATTAGGAGTGGTCGTGCATGCGGTCTTCAACGAGGGGAAGCCAGTCTTTCGGGTCAACAAGCAGGACATCTTCAAGAGCTTCAGCAGGCAACTAGACCAGTTGAGTCGTCTGAGTCCTGGAGTGCTGAGCAAAATCCCAGACGAGGTGCGAGAACATGTGAAGATGCTGCTGAGTGTCACAGCCAACGTGAGACCAGATGCTGATCAGATGACAAAGATCCCCTTCTTTGACGATGTTGGTGCCGTGACCCTGCAGTATTTTGATTCGCTCTTCCAGAGGGATAATTTACAGAAGTCCCAGTTCTATAAAGGCCTCCCTAAAGTCCTACCCAAGCTGCCCAAGAGGGTGGTGGTGTATCGAATCTTGCCAGCTCTCACCTCAGAGTTTGTGAATCCGGACATGGTGCCGTTTGTGTTGCCCAATGTGCTGCTCATAGCAGAAGAGTGCACAAAAGAGGAGTATGTTCGTCTGATTTTACCAGACCTCACCCCAGTGTTCAAACAACAGGAGCCCATTCAGATCCTCCTGATCTTCTTACAAAAGATGGACCTGCTTCTCACAAAAACACCTCCTGAGGACATCAAGAACAGTGTGCTCCCCATGGTTTACAGAGCACTGGAGGCTCCGTCCATTCAAATCCAGGAACTGTGCCTGAACATCATCCCCAGCTTTGCTAATCTGATTGACTATCCATCCATGAAGAATGCACTTATCCCTCGCATCAAATCGGCCTGTTTGCAGACCTCTTCGCTGGCTgTGAGGGTGAACTCGTTGGTGTGCTTGGGGAAAATCCTGGAGTATCTAGATAAGTGGTTTGTCATTGATGAAATCCTGCCTTTCCTGCAGCAGATTCCGTCCCGGGAGCCAGCTGTACTCATGGGAATTctggGTATATACAAGTGCACTTTTGCCCATAAGAAACTAGGCATCCCAAAGGAACACCTCGCAGGGAAAAGTGTGCCTCATTTGGTCAGCATCAGTATTGAAAACAACCTCAACCTCAACCAATTTAACTCTTTCATGGCTGTGATCAGAGAGATGCTGAATCGAATGGAAGCAGAACACAAGACCAAGCTGGAGCAACTCCACAGCATGCAGGAACAGCAGAGGAGCCTAAATCTGTCCAACCAGATGAACCCATCAGAGGACACAAAGAGTTCCCCTAATGTGTCGAGTCAGGTTCGAGATATTGATGACATATTTGGTGGAAGCTCAGCGAGTACAGGAGTAAATGGTAAAGAGAACGGCTCATCCGCCACCATCTCGCAGCCCTCTAGAGTTTCTCTGACCCTGGAGGAGAAGCAGCGGTTGGCTAAGGAGCAGGAGCAGGCTGCCAAACTAAGGAGCCAGCAACCTCTGGCACCACAGACTGTGAAACCTGCAACAACAACCACACAGGCAAAGGACTTAACCAGCAGTCTACTGAACAACATGACCTCACTTAACACCTTATCCCTGAGCTCTGGCCCTCGGACAACGCCCATGCAGACTGGAGGCGCACTCTCTTCTGGCTTCTCCAGTGGACCCAACATGAGTGGCATGGGTACCATGAACAATGGTTTCAATTCCAACATGGGCTTCCACGCTGGGGGCATGGGAATGCGGCCAGCCACCCCTGGCCTGTACGGAGGGATGGCGACCACCACCAGCACCCCGAACTTCAGCGCCCTCACACAGAACCAGACTCAGCCCAGCAAACCTCCGGACATGTCAGCCCTGGATTCCCTCTTCTCTGCTAGCAAGCCCAAAGTCAGCTTGAACCAAATGACCCCCAAACCAGTCGCCGGCCCTGCCGCCCCGTCCCCCTGGCTCAACCAGTTCGGTGCAGGCCAGCCCTCGCAGACTGCCGGCATGCAGGCAGCACCGATTGGCATGGCAGCAGCAGGGTCGCAAGGTGGGTTTGGAATGCAAGCTAACCCTTTCTTTAACCCACAGAACTTCTCACAAGCTGGAGCTAACCCCACCATGAACACGGGAATGTTGAAACAGAGCGCTTCGGTCAATAACGATCTGAAGGACCTCTTTGGTTAAACCAGTTCTGGCTGACTGTCGTTCTTCTTTCTATTTGCCTATCAACAGAGAGCTCTAAAGGAAATGATATCAACAATGCCGTGGATAAATATGAGGGTGAAGAAGATCTTTATAGTCCATCTTAATGAACCACTGCCtgctttttgctttgtttttcatCTGGTTAATTTTGAGTTGTGTATAACTGTATAATTTGTGGtggacctttttatttttattttatttttattttttttgagcatCAGTAAATCAGAAGACGGCCACCAGCCTTAAGCAGGCAGGTTCATGCATATTTCTTCTATACATCACACTCGTCTTACTGGTATTTCTGCCTGAGTACTGCATACCAGAGGtctatacacatacatatacaaacaTTCTTAACAACAGACACGCAGGCAAGGTGTGGAGAATCTTCCACTAAGTACTTGAGCCGAACACCTTCAGCCTAATCTTTGTCTGCTTCATCTCTAGCGTGTGGTTGGTGTGGGTGCTATACCACACGTTAAAATATCTCAATACTGTTTTACGgtaatttgtattattaaaatgGCATGTGCTTAATAGGGTGGGAGAAAATATCAGtattgcgatatattgtatCGTTTTTGTTCGCAATACATTATCAATAAGTGGCatcaaatgtaaatatatttattgaaacataggcaaTCTGAAATTCCTAAGACTTGTCTCCAAATTTGATTACTgatattactgctttattactccatGTTGCGGTGCTAATCTAATgatagggtaaacctgcagtaAGGAATATTGGTTGtttaattctgtgaaactgagaccaataaatccataattcctgttaTTTGAGGATTTTATCCTTGCGATAtatcgagtatcacagaatcacagtatggtgattttttttatgtataaactGCACTAAATCCAACTAACCAGGCCTAATTATTAAGGGTGTATAGGTACATTATGATGCATTCCTGGTACACACCTAAAACTGTGGATGGAGGAATATTAAATACCCACACAAGTTCAGAAATGGAACGTCGTCCCATCCATCtacacctcactccaactcctgTAATTCATGTTACCTTGcaatgagcacactggccagtgtacAACCTTATTCacatgataacacctcacaactttatAAAGCTGTTGATGTTCCCAAACCGTCCTAAGTTGACACTTTATAATCATTTAACATAACGATTTCTTGGCATGTCCGTGTGTATCGCAATACTGATAACTTACTTACTACCACAATAATTCAGTACTGTACTGAGCAAAACAATACTGTACTGCTGCAACAATTGCTGCAAAGTGGCTTCTACTAAGTGTGTGCGCTATGAATGCTGCAGACAGAGATCTGGCTGAAACTATTGAAGTATTGCTTTAATTGCTGTCCATCCAGTACTGAGACCATGTCACACTATTCCTCTATAGTTCTGTGGATGGATGAAGTTTGAGAAGGCTGCACTTTAGCTTTGTTTTAGGCAGGCAGACCAATAGgctttttccttcttcctcATTTAACTGATCTTTTCCTCACACTAGCCATGTATCTTCAGGTCCGATTTAAACCACTTTCGTTTTCTGTCATTTGAGCAAATGAACATGACCGAAGTCTCAGAAAAGATTACAAAGAAAACATTAGAAAAGGTGGAATGTtttatctctgctgtttgtttgaatgtgtgtgtgtgagaatgtgtgtgatgACAAAATAATGGAGGGaacctgtttttaatgtatcTGTTTGGGTTCtgcctttttctgtttttgtatttttattcagaatggGGTTATATAACAGTTGCTGGGTTGCACACTGGAGTGTTATGTGCAGTTTAATGAAACATGCAGATTTCTCATTAGATCCGCAGTATAATGAAACCTTTTGAATTTTAGTTTAAGTGTTTACGTGTATGGAAGCATTTAAACGCCAATGAAGTTATCTGCATAAAAATACAGATTAGCTGAAACCCAATAGGTAGtaattatttcaattatttcaACTTGTGTAGTTTTATGGGTTATAAGACAGTAacacttttaatattaaaaagctTTATTGGCCTTTAAAAGCTTCACTAGAAAGTctgtttatgtatgtttgtgtaccTATGTTTGTCCAGCTGGTGTGCGTCCATATATTTTGTAAGTAACCTATTgttgctgtcatgcaaaaatctttagtctctcattttctgtttttcaagTTCTTTAAAGTTTTGTCTAAATTtcctgatgaatggaccaatagaaacaaattaacaaattcaatctttttacattgactttcattaaaagtcAAAAAGGATTTTTTCTGTACTGTAAAATTGCAATTTGTGAGATATAAGGTTTTTGTCCAAGAGTGACAAtatgttttgttcttttgttgcATGTTACTGATCATACCTGCACTGGAGCCAATGTGATGGTAGTACTGGGACAGAGTGGGTGGAGGGaggggtttaaaaaaaacaaacaagaaaacaagaacaGAGAAGAAAAGCCGCACACCGGTCAGCTTAACATTTTATTCCTCATCATGACCAAATAGATAGCTGAGACACGGCGAGCCACTCTCCTAGAACTGTGTATAGTATTTACATATCATAGTGAATGAAGTGTATAGTATATTGAGATTTATTTGATATGGGTTaggattttttaatatattatctaTTGATCACTTTCTCAAAGGGGACCTCTGAGTACGAGTGAatgaatggagaaaaaacagaagccttatgAAGAGAGGTGTGCAATAATAGGACTTTTGAAGGGTTTTGTAAAAGGCTTgatgtgaatgagtgagtgtttTAACACATGCAGTTTTCATATCTAAGCAGTATCTGGGCTTTGTTTTCAATAAATGAATTACACACTGGATTGTCATCAGAGAAGTAATTTGGAAATTTTGGAAGTTTGTTTAATTGATTTGTGAGCAGAGGGTCTTATTCACCAGCCATATGTAAGAAGAAATTACGTTATTTAACCTCCTGTTATGTTGACCTTTAAGAAACGGCAGTAATGTTCCAAAGTCAGATGAAAAAgccagccaaaaaaaaatcaaattttaatttcagattatGGTTCCTCTATGATAATGATAATtctataagtaaataaaaaaatagtcataggtttttatctaaatatttacattttaaagccCATATTGTCAACAATAGTTCAAATTAAGTTTGTATTATTCAACAATGTAAAACAATAGACATTTTAcctcaaataatataaatatatatttaatattgtgttaaaatgttcaCCTCTTACAAATCATGGTTCGTTTATGATAATTCCCTATAGTTCACCATAAAAAGCCCTTATTGTGACTAATGGCTCAAACTGACCCgtgtttaatcatgtttaacagtccaaaacttaaatgtatttaataatatttttctcTAGCTTTTCTTTAGCTTAATTCATATACATTTCCATATCAAACGTTTAGCATCACTACTGGGTCAAACTGacttgtacagtgtgtgtgtaatcttaataactctaaaataatatagacACATTTAAATGAGTAATATTCCAATTCCATGTTCATTGAAATAGTCagggttaggtttaaggtttaCTGCTCTAATGACCTGCAACATTTCTGCAGTTTTCATGAAGGatcttacataataataatggttTTCTCatttggaatttatttattttatgaggACAATTACTTTTCTCAAGAGGATTTCTAAGAAAATCATTAAAACCTGAAATGGCTGGTGAATGAGGCCCAGTGATCTGGAAAGGATATTGTATGTTGTGGGGAAATCATTTGCTTGAAAGAAATCCTCTGCATAGGACGAATGCTTAGATTTTGCTGTGTTAATTCTTAGGTGATATTTAGTTGAACCAGAAATTCAGAATTTTCCTTACAGTAAACTGGACTTTACCCTCTGTTATTGGACCCGGTTCCAGTTGCCAGCAAGACTACTTACTAATTTCACACCTAAATGAATggaacacaaaaaagaaaaaaaaaagaaaagaaagcctATTCTTCTATCAGAATCTTTATATTCCAGCGATGTAATGTGTACAATGTGGCTTCTTTGTGAACTTTGTATTGTGTTACGGGGTTGTATTGTCTGAAGTTGAGAGTTTTCATGGAAATCTGTACATATTTATCAAAATACACTTGATGACTTTCTCTTTAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85945 lncRNA downstream 51064 13345150 ~ 13345421 (-) True G63704
TU85942 lncRNA downstream 71610 13324556 ~ 13324875 (-) True G63701
TU85931 lncRNA downstream 158996 13232151 ~ 13237489 (-) True G63692
TU85903 lncRNA downstream 197650 13173367 ~ 13198835 (-) True G63669
TU85898 lncRNA downstream 229811 13159519 ~ 13166674 (-) True G63664
TU86026 lncRNA upstream 22702 13444767 ~ 13447799 (-) False G63766
TU86029 lncRNA upstream 22702 13444767 ~ 13447799 (-) True G63766
TU86041 lncRNA upstream 120561 13542626 ~ 13543525 (-) False G63773
TU86043 lncRNA upstream 120561 13542626 ~ 13543568 (-) True G63773
TU86134 lncRNA upstream 139294 13561359 ~ 13562094 (-) True G63830
XM_022671365.1 mRNA downstream 136229 13249652 ~ 13260256 (-) True LOC103034510
XM_022671173.1 mRNA downstream 368987 12807815 ~ 13027498 (-) False LOC103025415
XM_022671361.1 mRNA downstream 697003 12691590 ~ 12699482 (-) True LOC103024791
XM_007234956.3 mRNA downstream 707450 12684226 ~ 12689035 (-) True LOC103033667
XM_007234950.3 mRNA downstream 895822 12373176 ~ 12500663 (-) True slc2a13
XM_007234963.3 mRNA upstream 1573 13423638 ~ 13432932 (-) True depdc4
XM_022671370.1 mRNA upstream 30891 13452956 ~ 13469076 (-) False LOC103026355
XM_022671369.1 mRNA upstream 30891 13452956 ~ 13469076 (-) True LOC103026355
XM_007234968.3 mRNA upstream 52258 13474323 ~ 13507294 (-) False vezt
XM_007234967.3 mRNA upstream 52258 13474323 ~ 13507294 (-) False vezt
TU85708 other downstream 1030746 12320555 ~ 12365739 (-) True G63516
TU85294 other downstream 2985254 10314799 ~ 10411231 (-) False G63217
TU85152 other downstream 3773697 9618661 ~ 9622788 (-) True G63104
TU84600 other downstream 5222683 8166678 ~ 8173802 (-) False LOC111192870
TU84254 other downstream 6658537 6735163 ~ 6737948 (-) True G62484
TU86395 other upstream 1363256 14785321 ~ 14786149 (-) True G64034
TU86473 other upstream 1572099 14994164 ~ 14994832 (-) True G64060
TU86884 other upstream 3163000 16585065 ~ 16585647 (-) True G64387
TU87029 other upstream 3460270 16882335 ~ 16887903 (-) False G64492
TU87032 other upstream 3460270 16882335 ~ 16887903 (-) True G64492

Expression Profile