RNA id: TU170848


Basic Information

Item Value
RNA id TU170848
length 1638
lncRNA type intronic
GC content 0.37
exon number 2
gene id G126504
representative True

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 31349879 ~ 31352148 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTGGTACGCTCATTGACCTCCTCATAAAGAACAAGGatcaatggcaggcaattaatttaatggagaAGCAACACTAAacaaaagtgaaaccatgacacggtcataacacagatgattgaaaattcatgaaacttggcaaaaacacaagagacatcataagacacgtttttagtattggtaagactgactccgcccaacaggaagtctgccattttgaaaaaagtgtgttttacacacattttttgcatactttgtcgaactcctcctagggaatttgtcgaatactcttgatatttgtctgTAATAAACTGCTGACATACTTCATtgtaaattgcgaaggaatagtcgatatcttaaacgaggacgaaatggcggacagttgaattgcttgagatgccccgttaaaacaggaagtgaatacattctggtgttagtaggtgtttgaggaggttaaaaaggttgaaaactctcgaaaatttacaggcctgcttgatttaagcagtagtttgatctgaaattaaaatttcatatatacgtatttcattggctctatagcgccacctaggtttcaatgcatatttgacattacgggaatgctcaaaacctcttgaaaattgacagattgcataagacctaaaaacactttacaaatattttgacaattttttcatgtatagctagcggactctacagcgccccctaattggttcgtttaataaattaattgtggatgtgtcaaaatttgtctaatcttctcaaattttggtaggatcgtagatagtatgaccctgcacatatttgcaattggcttgtattagctccgcccaacaggaagtcggccatattggaatttgtaatatttttacacatttttcacgaaCTCATTCAAACTgctcctagagtctttgtcagattacctcttatttcgctgtaaatgaacaacagacatatttgatgataactgccaaaggattagttgatcgGTAAAACGGTGACCCAATGGCGAACAATTGAttcactagagacgcaacactaaaccaaagtgaaaccatgacacggtcagaaaacagattattgaaaattcatgaaacttggcagaaacacaaaagacatcattacacacattttcagcattggtaggactgactccgcccaacaggaagtcggccattttgaaatatctgcattttacacacattttttgtgtacattgtcaaactactcctagcaaatttgttgaattctcttggtatttggtaaaaataaacattgaacatatctgatgataaattgtgaaggaatagtcgatatctcaaacgaggacgaaatggcagaTGGTTGAATTTGTGAGATGCCACATCAAAACAGGAGGTCAAAACCTAGGTAATGCCAGGTGTTTTGAGGAGGTTATAACGaagaaaaactcacaaaatttgaCTGGCCTGCTTATCTAAGGCTGTTGTTTgatgtagaattagaatttcaaatacatgtattttaacagcgctatagcgccacctgtattttaaatggatatttcacatgtttaacaggatagaaaactcttgaaaattggcacactcaataagaccttaaaattacttttaccggTTTCTCTgtttggcccggtacgattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170840 lncRNA downstream 30448 31281873 ~ 31319431 (-) True G126497
TU170808 lncRNA downstream 123022 31224642 ~ 31226857 (-) True G126483
TU170785 lncRNA downstream 139798 31173920 ~ 31210081 (-) True G126474
TU170805 lncRNA downstream 142109 31207014 ~ 31207770 (-) True G126481
TU170806 lncRNA downstream 142109 31207378 ~ 31207770 (-) False G126481
TU170850 lncRNA upstream 8495 31360643 ~ 31362759 (-) True G126506
TU170851 lncRNA upstream 8933 31361081 ~ 31361923 (-) True G126507
TU170866 lncRNA upstream 93952 31446100 ~ 31446646 (-) True G126515
TU170865 lncRNA upstream 133706 31485854 ~ 31547822 (-) True G126514
TU170883 lncRNA upstream 281567 31633715 ~ 31633987 (-) True G126531
XM_022676508.1 mRNA downstream 50885 31283548 ~ 31298994 (-) True LOC103025378
XM_007246053.3 mRNA downstream 77213 31179845 ~ 31272666 (-) True arrdc1
XM_022676501.1 mRNA downstream 208203 31096273 ~ 31141676 (-) True ehmt1
XM_015604966.2 mRNA upstream 13483 31365631 ~ 31370026 (-) True phpt1
XM_007246051.3 mRNA upstream 21130 31373278 ~ 31384862 (-) True noc4l
XM_007246049.3 mRNA upstream 34306 31386454 ~ 31394928 (-) True pus1
XM_007246046.3 mRNA upstream 50727 31402875 ~ 31455616 (-) False ulk1
XM_007246047.3 mRNA upstream 50727 31402875 ~ 31455616 (-) False ulk1
TU170845 other downstream 36179 31307550 ~ 31313700 (-) True G126502
TU170305 other downstream 1376959 29926802 ~ 29972920 (-) True G126126
TU169660 other downstream 2614999 28727255 ~ 28734880 (-) False LOC111193936
TU169559 other downstream 3648236 27682342 ~ 27701643 (-) False LOC111193957
TU169167 other downstream 4377493 26964478 ~ 26972386 (-) False LOC103038701
TU171073 other upstream 1292670 32644818 ~ 32645341 (-) True G126680
TU171268 other upstream 2127969 33480117 ~ 33487989 (-) False LOC103046968
XR_002650826.1 other upstream 3006622 34358770 ~ 34455459 (-) False LOC103023154
TU171878 other upstream 4223815 35575963 ~ 35636558 (-) False cast
TU172263 other upstream 4614202 35966350 ~ 35969397 (-) False G127514

Expression Profile