RNA id: XM_022676585.1


Basic Information

Item Value
RNA id XM_022676585.1
length 5019
RNA type mRNA
GC content 0.46
exon number 31
gene id vav2
representative False

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 35171516 ~ 35464602 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGATCTGATTCGTGCACGAGTCGCTCCTCGCTGCTCGCACGGCTCGTGGGCTCTGGAGCGGAGGAGAACAAACAcaggagaaacagagagaaaacgGGAGAAAACGGGAGGAAAAGAGGACTTTAAAACGACGGGAGGACTACAGAGGACGGAGGAGGGATATGCGGAGGGACGGGAGGAGTTAATGCGTGTTTTTGTGGTTTTTaactccttttttttgtttgcaaacAAACGAGAGGACCAACTGAAAACAGACAACTCAACACGGAGATTGAGACCCAGCGAGTTTCAGCGGACGGTAACGGGGaccgtttttacagttttacaccGCAAGTTTGAGTTAAGAAGAAGCGGGCAGTTGTTTTTTTGAgcagttttgtgtgtgtttgtgtggtttttgGTGTGTAAAAAGGAGTGTAAGGATAATAACCGACCCTGCGCTGCGTCtctctgaactgaactgactCGTTTGTAACGTtagtgttttgctgtttttgctgttttaaaagctttaaactgCTACAAAAAATCGGTTTTACGGTGTTTTGAGGCTGAGCAGAAGCTCAAGCAGATAGTTTAGCTGTAGGATAACTAACGTTAACGTTAACCTGACGTTACACGCGATGAAGAAGAGGAAAGTGTAACTACTGATTCAATTTCAATCAAACGCGTTTGGATTAACTgacgagctgctgctgctggaggaggagagaCAGCAGAGAAGAAATCTTCATATATTCTTCACTTCATTCCTATGGACCACCTGAAGAAATCCACTATTTTTCGCTGCTGTGATTTTTAAGTTCAGCGCACCTTCTCTGGATCTCAGGCCTGGTGCCGAGCTGCCAAACCCGGAGTGCTTAGCTTGCTCTGCCCGCCATGGAGGAGTGGAGGCAGTGCGGCCGCTGGCTCATAGACTGCAAGGTTTTGCCCCCCAACCACCGGGTCGTCTGGCCCTCTGCGGTGGTCTTCGACCTGGCCCAGGCGCTTCGAGATGGAGTGCTCTTGTGCCAAATGCTTCACAACTTGTCCCCTGGATCCGTGGACTTGAAGCAGATCAACTTCAGACCCCAGATGTCACAGttcCTGTGTCTGAAGAATATCCGCACATTCCTCAAGGTGTGCCATGACAAGTTTGGGCTGAGGAACAGCGAGCTTTTCGATCCCTTCGACCTGTTTGACGTTAGGGACTTCGGCAAGGTGATCTCCGCCATGTCCAGAATCTCCCACAACAGCATCGCTCAGATCAAAGGCATCAGGCCGTTTCCATCAGAGGACACTGCTCTGAATGAAGATGATGTCTACCGAAGCTTGGAGGAGCTGGCAGATGAACATGACGTGGGTGAAGATGACATCTATGACTGTGTGCCGTGTGAAGATGAAGGAGATGATATCTACGAGGACATCATTAAGGTGGAAGTTAGGCAGCCCATGATCAGATACATGCAGAAAATGGGCATGACTGAGGATGACAAGAGGAACTGCTGCTTGGTGGAGATCCAGGAGACGGAGGCGAAGTACTACAAGACACTGGAGGACATTGAGAAGAGTTACATGATTCCCCTGAAGCAAGTTTTAACTCCGCAGGAGATGGAAGCCATCTTTGTTAATCTAGAGGACATCATCAAAGTCCATTTTGCCCTACTGAGAGCCATTGACCTGAACATGGTGAGCGGCGGCAACGGCCTCGGGAAGATCTTCCTAGACTTCAAGGAGAGGCTCCTGATCTACGGTCAGTACTGCAGTCATATGGAGCACGCCCAGAAGACCCTGGAGGAGCTCATCGTCGCACGAGAGGATGTGAAGAGCAAAGTGGAGGAGTGCACCATGAAGGTTCAGGAGGGGAAATTCAAACTCCAGGATCTGCTGGTGGTTCCAATGCAGAGGGTCCTGAAATACCACTTGCTACTAAAGGAGTTAGTGAGTCACTCGACAGACCGACCAGAGAGACAGCAGCTAAAGGAGGCCCTGGAAGCCATGCAGGACCTTGCCATGTACATCAATGAAGTCAAAAGGGACAACGAGACCTTGAAGAAAATAAGTGAATTCCAGAGCTCGATAGAAAATCTGCAAGTGAAACTGGAGGAGTATGGGAGGCCAAAGATAGACGGAGAACTGAAAGTCTGCTCTATACTTAACCGGACCAAACAAGATAGGTATATCTTCCTGTTTGATAAAGTAGTAATCGTGTGCAAGAGAAAAGGCTACAACTATGAGCTCAAGGAGATAATTGAGCTCCAGCTTTACAAGATGTCTGACGACCCCATGAACAACAGAGACATGAAAAAGGCCAGTGGAAAAATGTGGTCCTATGGCTTCTACCTGATCCACTTGCAGGGCAAGCAAGGCTTCCAGTTCTTCTGTAAGACAGAAGACACTAAGAGAAAGTGGATGGAGCAGTTTGAGATGGCCATGTCAAACATCAAGCCAGAACGAGCTACAGCCAACCAGCACAATTTCCAGATGCACACTTTTGAGAAGAACACCAACTGCAGGGCCTGTAAGATGCTGCTGAGGGGGATCTTCTACCAAGGATACTACTGTTCACGATGTGGGGCCGGAGCCCATAAGGAGTGTTTGGAGGTCATCACCATCTGTAAAATCAgtCCTCATGATTTGGAGCCTGGACTTCCACCGTCAGgtCCAAAGATGGTAGCCATCAGGAACTACCATGGTAATCCAGCCCCACCAGGCAAAAGCCCCCTCTCCTTCCAGACAGGGGAcgtcatagagctgctaaagggAGACCCAGACACTTCGTGGTGGGAGGGAAGGCTCATTCAGACCCTGAAGACTGGCTATTTTCCCAGCTCCTGTGTGAAGCCATGTATAGACCCTAAGCCTTTCCTATCTTGTCCAAGCCGCCAGGCCTCAAGAGAGATGGATTATTGTGTTTATCCGTGGTTTGCGGGAAACATGGAACGGCAGCAAGCCGATAATCTCCTGAAGTCTCACAGTAGTGGCACGTACCTTATTAGAGAACGAACTGCAGAAGCCGAGCGCTTCGCCATCAGCATCAAGTTTAATGATGAAGTTAAACACATCAAAGTTATAGAGAAAGACAACTGGATTCACATTACAGAGGCCAAAAAGTTTGAAAGCCTACTGGAGCTGgttgagtattatcagtctCACTCACTGAAAGAGAGCTTTAAGCTGTTGGACACGACGTTACGATACCCTTACAAGTCCAGAGAGCGCTCCAATTCTCGTGCTAGTACACGATCTCCAGCAGCCTCCTGTGCTTCCTACAACTTCTCCTTCCTCAGTCCTCAGGGCCTCAACTTCTCTTCTCAAAGCTCTGCCCCCTTCTGGTCAGTTTTCACGCCCCGGGTGGTCAGCACGGCAGTGGCCAGGTATAACTTTGCTGCTCGAGACATGAGGGAGCTGTCTTTGAGAGAAGGGGACATCGTCAAAATCTACAGCAAGATCGGAGGAGACCAGGGCTGGTGGAAAGGAGAGGCAAACGGAAGGATTGGCTGGTTCCCCTCGACGTACGTTGAAGAGGAAGGCGTGCAGTGAGGCTGTGATGGCATGGTTTTTCTACAATCAGATCACCCTCCCGTCCACGGACCTCCAACAGAGGACTAATGGGTTCTGTGGAAACACATTGtggaatactttttttttttttttttttttttttacaccgtGAATATTTGTTTTCCGATTTCTTTGTTCAGTATGTCCGAATCTGCTTTtcccttctcttttttctttggaTCTTGTGATCTCTGTGAAGAAAACTGGATGGATTCTTTCCCGTTCCTTTTTAAGGGGCTGCTGGAGAAAATGTGAACAGTCCAGAGTCTACAACTTTGCCTTGGACACGCCAAACCttcagctttgtttttttttttttgtaaagatagTTATAAAGATTTCTGTGGCCAACAGATAGAGCTGAGGGTGGGCCTGTATAGATAATTTATTCCAGAGAagtatctattaaaaaaaagagtgatgGAAGTTTATTGTTAAGAAAGTAGAAGGAACAAGGAGAAGATGCACTTTTGCGTTCCTTTACAGAGAGAACTTGCCTTAGTGCTTATACCAATGCCTTGGGGGCTGAAATGGGGCACTGGTGGAAACGTGCTACATGGAAATTtctgcacacatgcacacacacacacaaacatgaacACACCTCTGCCCTGTACAGAATAAATGGTGCCTTTGAAGTGCAATCCCTGTCCTCAGACCACTCATACAGGTGCTTTCTGACCCCGGAGTCAGACGAAAAGACAGACAGCCCTTCAGGCAACAGGACAGCTGAGACGCCCTGATTGGCTGAAATCAGACAACCCAAACAAATCTGCTCTAACACAAGAGAGGACAGTCGTCCGGAAGCACTGGAACTATCGCCAAATAAACGTGTACCGTATCAGTACCCAGAACCGAGTCTGGACAATGAAGACTGTCCTCATATGACCATAAGAGGAGCAGCAGGCAGAACTGACACCAACACTAAATCTGTAGAGCCTGATCACAGATACTGGTGTCCAACTGCTTACAGGAAGAAATGACTGACAGGCTAAATCAAGGGCAAATtcaacagtatacagtatattgccaAACACATTTGTTTGTTAAATATTCACAGAAATTTAAATCACATCATTAACACACTGGTTGATTTAATAATTATCATTTGCAGTTTACACTATATGCCTAAacgtttgtggacaccccttcttaTAATGCCTTCAGCATTGCATAGATGTTTAAACGCACACAGTCCAATGTCCAACTGCCTGTAGGCCTGGCACAAtatctgttttctttttgcaatatattactgcagaaaaataaagaatacactgattttttgctTCACAAATATAAAAGTCCATATGACTTATGCACAATGAGTAAAATAAAGCAACAGGTCTAACTGCCAACAGAATAGGACTCTAAAGCATATATGTGAACATGAATCTACTAATCAACTTTTAACTGAAACTACCAAACAAGTTGgacatctgaggtaaatggaaaaacagcaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171643 lncRNA upstream 77310 35093643 ~ 35094207 (+) True G127122
TU171630 lncRNA upstream 202424 34968673 ~ 34969093 (+) True G127109
TU171613 lncRNA upstream 326074 34845169 ~ 34845443 (+) True G127097
TU171599 lncRNA upstream 349610 34821685 ~ 34821907 (+) True G127086
TU171589 lncRNA upstream 374971 34782070 ~ 34796546 (+) True G127077
TU171810 lncRNA downstream 12564 35476122 ~ 35492475 (+) True G127250
TU171827 lncRNA downstream 92353 35555911 ~ 35577753 (+) False G127264
TU171825 lncRNA downstream 112434 35575992 ~ 35636572 (+) False G127264
TU171828 lncRNA downstream 112434 35575992 ~ 35577753 (+) True G127264
TU171830 lncRNA downstream 112434 35575992 ~ 35577753 (+) False G127264
XM_007253951.3 mRNA upstream 8489 35153925 ~ 35163028 (+) False LOC103032475
XM_007253950.3 mRNA upstream 8489 35153925 ~ 35163028 (+) True LOC103032475
XM_022676589.1 mRNA upstream 8489 35156244 ~ 35163028 (+) False LOC103032475
XM_007253948.3 mRNA upstream 9179 35153924 ~ 35162338 (+) False LOC103032475
XM_007253937.3 mRNA downstream 63863 35527421 ~ 35536244 (+) True LOC103029836
XM_007253938.3 mRNA downstream 63863 35527421 ~ 35536244 (+) False LOC103029836
XM_007253939.3 mRNA downstream 80100 35543658 ~ 35554291 (+) True LOC103030369
XM_007253936.3 mRNA downstream 104497 35568055 ~ 35574704 (+) True LOC103029511
XM_007253958.3 mRNA downstream 207757 35671315 ~ 35699103 (+) True pcsk1
TU171537 other upstream 706568 34458094 ~ 34464949 (+) False LOC103040215
TU171383 other upstream 1296148 33865504 ~ 33875369 (+) True G126903
trnam-cau_22 other upstream 1683396 33488050 ~ 33488121 (+) True trnam-cau_22
TU171104 other upstream 2308061 32862881 ~ 32863456 (+) True G126708
TU171098 other upstream 2338051 32832962 ~ 32833466 (+) True G126702
TU171809 other downstream 12564 35476122 ~ 35492475 (+) False G127250
TU172005 other downstream 471361 35934919 ~ 35943122 (+) False G127359
TU172017 other downstream 491300 35954858 ~ 35958301 (+) True G127365
XR_002650830.1 other downstream 502776 35966334 ~ 35969453 (+) False dtwd2
TU172052 other downstream 712235 36175793 ~ 36177113 (+) True G127393

Expression Profile