RNA id: TU1616


Basic Information

Item Value
RNA id TU1616
length 406
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G1214
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 3385373 ~ 3386231 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCACCACTCTTCTACACTCTTCACCACTCTTCCACAGTCTTCACCACTCTTCCAGTCTTTACCACTCTTCCACAGTCTTCACCACTTTTCTACAGTCTTCACCATATTACTCTACACTCTTCCACAGTCTTCACTAGTCTTCACCACTTTTCTACAGTCTTCACCACTTCTCTCCACTCTTCTACAGTCTTCACCACTTCTCTCCACTCTTCTACAGTCTTCACCACTCCTCTACACTCTTCCACAGTCTTCACCACTCCTCTACACTCTTCCACAGTCTTCACCACTCTTCCACAGTCTTCACCACTCCTCTACACTCTTCCACAGTCTTCACCACTCCTCAACACTCTTCCACAGTCTTCCACACTCTTCCTCGCTCTTTTGCAGGAGCTGAGCTGTAATAGTG

Function

GO: NA

KEGG:

id description
ko04971 Gastric acid secretion
ko04966 Collecting duct acid secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1612 lncRNA downstream 11758 3368803 ~ 3373615 (-) True G1211
TU1371 lncRNA downstream 87727 3296240 ~ 3297646 (-) True G1013
TU1375 lncRNA downstream 90591 3294576 ~ 3294782 (-) True G1017
TU1374 lncRNA downstream 95455 3289505 ~ 3289918 (-) True G1016
TU1343 lncRNA downstream 197391 3187503 ~ 3187982 (-) True G990
TU1621 lncRNA upstream 27454 3413685 ~ 3415112 (-) False LOC103029371
TU1628 lncRNA upstream 87958 3474189 ~ 3474864 (-) True G1224
TU1670 lncRNA upstream 191998 3578229 ~ 3585540 (-) True G1238
TU1654 lncRNA upstream 209512 3595743 ~ 3599731 (-) True G1234
TU1664 lncRNA upstream 209512 3595743 ~ 3599731 (-) False G1234
XM_007245151.2 mRNA downstream 2251 3376610 ~ 3383122 (-) True LOC103033290
XM_015604753.2 mRNA downstream 69352 3297813 ~ 3316021 (-) False olfml2b
XM_007245055.3 mRNA downstream 69352 3297813 ~ 3316021 (-) True olfml2b
XM_022673821.1 mRNA downstream 168352 3189007 ~ 3217021 (-) True LOC103033918
XM_022673759.1 mRNA downstream 205779 3163711 ~ 3179594 (-) False LOC111193343
XM_022671241.1 mRNA upstream 7973 3394204 ~ 3445386 (-) True LOC103029371
XM_022674427.1 mRNA upstream 104641 3490872 ~ 3503293 (-) True LOC103028436
XM_022674557.1 mRNA upstream 130393 3516624 ~ 3554189 (-) False LOC103032346
XM_022674501.1 mRNA upstream 130393 3516624 ~ 3554178 (-) True LOC103032346
XM_022674646.1 mRNA upstream 217955 3604186 ~ 3666404 (-) True LOC103032017
TU1203 other downstream 416896 2910754 ~ 2968477 (-) True LOC103032016
TU1089 other downstream 830686 2550216 ~ 2554687 (-) False G807
XR_454399.3 other downstream 950972 2423713 ~ 2434401 (-) True znf414
TU795 other downstream 1512246 1864515 ~ 1873127 (-) True yipf1
XR_002648446.1 other downstream 2529213 855579 ~ 856160 (-) True LOC111197534
TU1713 other upstream 514652 3900883 ~ 3909663 (-) False wdfy1
TU1773 other upstream 713534 4099765 ~ 4101566 (-) True G1308
TU1837 other upstream 891112 4277343 ~ 4304762 (-) False LOC111193783
TU2412 other upstream 2325105 5711336 ~ 5712686 (-) False LOC103031123
TU2413 other upstream 2326511 5712742 ~ 5721108 (-) False LOC103031123

Expression Profile