RNA id: XM_022671241.1


Basic Information

Item Value
RNA id XM_022671241.1
length 6076
RNA type mRNA
GC content 0.50
exon number 34
gene id LOC103029371
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 3394204 ~ 3445386 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCCCCTTCAGCTGCAGAGAGAAGGACGTTCTGGACGTGCAGGAGGAAAAACAAGCAGCCGAGTGCAGTGAAGGGGGTCCAGCTGATTCCCAGTATACAGTTTCCTCTACAGCAGGAGATAAAGAGGGGGATCATGTCACCGAGTAAACAGATTCGAGTGCTGGTCCTTAATGACATGGAAAAACTCGACAGGACCCTCTTCCGCCTGGAGCAAGGTTTTGAGCTGCAGTTCAGGCTGGGTCCGACTCTCCAGGGCAAAAATATTCATGTTCACACCAACTACCCGGCCCAGGGCGAGCAGTTCGATCGGCACCGCTTTCGCACGCTGGACTGGATCAATCCCACGGGCAGAGAGGACGATTCGGACAAGTTCTGCTCCCTCGAGCTGCAGATCGCCGGCTCCTACCAGTATTACTTTGGACAAGGagataaAGATAAGAGTGGGGGAGGGTATATAGTGGTGGATCCGATGCTGCGAGTAGGAGCTGATAACCATGTCCTACCGTTAGACTGCATCAGCATCCAGACCTACCTGGCCAAGTGCCTGGGACCTCTGGACGAGTGGCTGGACCGACTCAGAGTGGCCAAAGAGACCGGCTATAATATGATCCATTTCACACCGCTGCAGACTTTGGGTGAATCTCGCTCCTGCTACTCCTTGGCTGACCAGCTGGAGCTCAACCCGGACTTTTCTCCCCCCGGGCAGAACTACACCTGGACGGACGTGGGTAACCTGGTCGAGAAGATGAAGAAGGAGTGGGACATGCTGTGTATTACTGATGTTGTTTACAACCATAcagctgCTAACAGCGTGTGGATACAGAAGCATCCAGAGTGCGGCTATAACTTGCTGAACTCCCCCCACCTACGTCCAGCCTGGGTACTGGACAGGGCACTGTGGCATGTGACCTGTGACATTGCAGACGGAAAATATGCAGACCGGGGCGTTCCTGCCCTGTTACAAAACGAACATCACAtgaatTCCATCCGAGGAATCTTCTGGCAGGATGTGTATCCCAAGACAAAGCTGTGGGAGTTCTTCCAGGTGAAAGTGGAGCCTCTGGTGGAGAAATTCAGGACTTTGCTGCAGAATGGATCCAAACCCAGCAAGATTCAGACTGATGGTAAGAAGCAGCTGAAGATCATCCAGGACCCTCAGTACAACCGCTTTGGGTGCACAGTAGACctgaatacagctctggagatcTTTGTTTCCAATGGAAACAGTCCTGGGGCCATAGAAGACTGCTGTAACTGGTTCAGAAAGAGACTGGAGGAGCTGAACGCAGAACAGTTCAAAGAGGTCAACTATCATCAGGAACAGGCCACTAATTGCTGTATGGGTACGGTGTCTTATGAGCGCCTGGCGGATCACGGCCCCAAGCTCGGCCCAGTCACCAGAAAGCATCCTCTGGTCACAAgGTATTTTACTTTCCCATTCAAAGAGTCACCTCTAGAGCAGGACCTGCTGCTCATGGACCAGCCGGACAAAGCCTGCCACTTCCTGGCCCACAACGGCTGGGTGATGGGGGACGATCCACTGCGCAACTTTGCAGAACCAGGCTCTAACGTGTACATCAGGAGAGAGCTGATTTGCTGGGGCGACAGCGTGAAGCTTCGCTATGGCAAAGGCCCAGAGGACTGCCCGTATCTGTGGGCACACATgcagaaatacacagaaattacAGCTAAATACTTTACCGGAGTCCGGCTCGACAACTGCCACTCAACCCCACTGCATGTGGCTGAGTTCATGCTGGCCGCAGCCCGTGCCATCAACCCTGACCTGTACGTGGTGGCTGAGCTGTTCACGGGCAGCGAGGAGCTGGACAATGTGTTTGTGACTAGACTAGGCATCTCCTCCCTCATCAGAGaggCACTGAGTGCAGGGGACAGTCATGAAGAAGGCCGGTTGGTGTATCGGTACGGTGGAGAGCCTGTGGGAGCTTTCCTTCAGCCGAGTCTCCGCCCACTGGTGCCCAGCATCGCTCACGCCATGTTCCTGGACATTACCCATGACAACGAGTGTCCCATTCAGattCGCTCAGCATTCGACTCTCTGCCCAGTTCTGCTATCGTCTCCATGGCGTGTTGTGCTACAGGCAGCACACGAGGCTACGACGAGTTCGTTCCTCATCAGATCTCGGTGGTGTCAGAGGAACGCTTCTATCAGAAGTGGAACCCTCAGGCTAAGCCCTCCCCACCTGGAGAGGTCAGCCTGCAGTCGGGCATCATCGCTGGAAAACTGGCTCTGAACCGCCTGCATCAGGAGCTGGCAGCCAAGGGCTTCAGCCAGGTGTACGTGGATCAGGTGGATGAGGACATCGTAGCAGTGACCCGCCACTGTCCCAGCTCACACCAGTCTGTAGTGGCCGTGTGTCGCACCGCCTTCAAAAACCCCAAACACCACAAGTACTCTGACGAGGTTCCACCCATGTTCATCCCGGGTCAGTATCAAAACATCTGCTTATAttcagccactggcCTATTGAAGGACAGCACAGTGGTGAAGCAGGCTGGGGTGACGTCTCGAGGCCGCAGCGAGTTTGTGCAGGAGATTGTGTTTGAGCGTCTAACGCCTGGCAGTGTGATTGCTTTCAGGGTGAGTTTGGACCCTACAGCTCAGGAGCTTGTGGGGATTCTGAGGACTCATCTCATTCAGTTTAACCCTCACTATGCAGCAGGCAGCATACCAGATAAGAACGCCCCAGAAATACTGAAAACTCCACTGAAAGAATTGATGGAGAAGCTGACGCTGGCTGATATGAATGTGCTGATGTTTCGCTGTGATGAAGAGGAGAAGGAAGATGGAGGGGGCTGTTACAGCATCCCTGGCTGGACCACCCTAAAGTATGGTGGCCTGCAAGGTCTGTTGTCAGTGATGGCTGACATTCGGCCTAAGAATGACTTGGGCCACCCATTCTGTGATAACCTGAGACAGGGTGACTGGATGATCGATTATGTGAGCAGCCGGCTGGTGTCCCATGGAGGAACACTCGGAGAGGTTGGTCAGTGGTTCCAGGCCATGTTTGGCTACCTCAAACACATCCCTCGCTACCTCATCCCCTGCTACTTTGATGCTGTGCTGGTTGGGGCCTACACTACTGCCCTGGATGCTTCCTTCAAATTAATGTCCAGttttgtGCAGCAAGGCTCCTCATTTGTGCGCCAGCTGGCTCTGGGTTCAATCCAGATGTGTGGCATTGGGCGTTTTCCTGCtctgcctcctctctctcccgctctcaCCGACGTTCCTTACAGAACCAACAGCATCACCCAGCAGGAGCAGCAGTTCTGCGTGTCCATGGCTGCAGGTTTACCTCATTTCTCTGCTGGAATCTTCCGCTGTTGGGGCAGAGACACCTTCATTGCTCTGCGGGGCCTCCTGCTGGTCACCGGCCGTCACCTGGAGGCCAGgAACATCATCCTGTCGTTTGCTGGTACTCTAAGACACGGGCTGATCCCGAACCTGCTGGGTGAGGGTGTTTCTGCCCGGTTTAACTGTCGTGATGCTGTATGGTGGTGGCTTCAGTGTATCCAGGACTACTCCACCATTGTTCCTAACGGAACCAGCATTCTGCAGTGTCCCGTCTCCAGGATGTACCCCACCGACGACTCACAGCCACAAGCTCCAGGAACAGTGGATCAGCCTCTGTATGATGTGATTCATGAAGCTCTGCAGCGCCACATGCAGGGGATCGAGTTCAGGGAGAGAAATGCTGGACCTCAGATTGACCGCAACATGAGAGATGAAGGTTTCAACATTGTGGCCAAGGTGAACCCCGACACTGGCTTTGTTTATGGAGGAAACCGCTTCAACTGTGGAACCTGGATGGATAAAATGGGTGAAAGTGAAAGAGCGCGCAACAAGGGCATCCCTGCTACACCCAGGGACGGTTCAGCAGTGGAGATTGTGGCTCTGTGTAAATCTGCAGTGCGCTGGCTGGTGGAGCTCCATAAGCAGGGTCTTTTCCCTTACGACTGTGTAACCATCAACAAAGACGGTGCAAAAATCACTGTGCCGTACGCAGACTGGAACAGAAACCTACAGAACAACTTTGAGAAAATGTTCTACGTGTCTCAGGACCCAAAAGACCCCAATGAGAAACACCCTGAGCTGGTCCACAAAAGGGGAATTTACAAGGACAGCGTCGGAGCCTCCAGCCCCTGGTGTGATTATCAGCTCCGCCCCAACTTCACCATCGCCATGGTGGTGGCACCAGAGCTGTTTACAGTTGAGAGGGCCTGGGAGGCTCTGAACATGGCTGAGAAGCTGCTGGGACCACTGGGAATGAAGACGTTAGATCCAGATGACATGGTTTACTGTGGCGTTTATGACAATTCACTGGACAATGACAACTACAACCTAGCCAAAGGCTTCAACTACCACCAAGGCCCTGAATGGCTTTGGCCGGTCGGCTACTTCCTGCGTGCCAAGTTATACTTCGCCAAGAAACTTGGGAAGGAAACTTACGACAAGACGGTGTATTTAGTGAAGAATGTCCTGTCTCGTCATTATGTCCATTTGGAACGgtcCCCCTGGAAGGGTCTGCCAGAACTGACCAATGAGAACGGCCAGTACTGCTCCTTCAGCTGCGAGACACAGGCCTGGTCTATTGCTACTGTTCTGGAGGTCCTGTATGATCTGTGAGCTTTGAGAAGCTGAGATCCACCAGACTTGAGGGCTTCCCCCAAGTTTTCTGCTGGATGTACCTGTGCTTCTTGAAGGCAATAGAAACATAGTATACACTGAGTTGCCATTTTATTAGGTACTACCCACTGTACCTACTTCACCTACCTGTTAGATTGGATTTATTGGGTTCTACCTACTATGCTCAATAGCCATAAGCCCGTATTTGTGCACAtttgcatttatatatttacatttactggaTTTGCCTGACACTTTTATCTAGAGCAACTTACAAAGGTTATTCCGGTTACAGAGGTGGGCGAGTGTTTTgttgggagtcttgcccaaaGACTCTTATTGGTATATAACatagcatagtcacccagaccaggaattgaaccacaATCTCCTACCTgctcactggcaggtggtggtgtcatccactgtgccacaccaaccacacatTTCTGTCTTTGATTAGAGAAGGAACACCGCTGACCATTCTGAGTTCCATACTGGTTAATAGACCTTTCCACTGGAAGATATCAAAGTATTACCGTTTTTTTAACACACCTGAGCTGGGATTAGTGTTCCAGCTGCAGGGCACCAGCatagttgtttctaataaagtggccagtgtattATAAAGCATACTGAGATAGACGGGATGCAgtaaaacttcatgaacatcCAGTAAACTGATAAAATGGCCATTAAGTGTAGGTAAAAGGGatatatatatggacaaaagttaATTAATACAATGTTTTGTCCACAGTTAAGGGCATTGAAAACTAGTTTATCTTGCTATTGTTgcagtaactgtttctactgtctaGAAAAGGCTTTGGAAGGGAATTTAAAGATTTGATCCAGTGACAAGACCGCTGTAGGGGtcaactgtgtttattaatctgCTCCAGGAAGTCTtattcttttggcagtatgACTATTAAACTAGCTGTAAGGGCATTTTTACATCtgtgcatttattagaaggttTGTCCACAATCACTTGCACATATAGTGTGCAGTAGGTTTACTAAATAAACTGGTGACTCAGTGTAGGTTATAGTATGTGCACTGTACGGTACAATAGGTTACATGAACCTGTGCTCTGCCAGTATCACTAGAATGTCTAATCCTTGGTCTAACCCACTTCACGTATCCCAGCACTTGGGCACATGACACAGCTGCCTTCAATTCCCATTTAGTCTTCCTCTAATCCACAGTTCCCTTTGAGTGACTGAATTTTAATGGCTGTagtcctgctgctgtttctgtaactgtgtgtctttgtgttttatttgtgcaTGTTTACTGTAGAAGGGCTGGTATGAAATGTCTCTGTTTTCCCTGTGAATTCACTTAATGGAATTTACACAGCTATGTGCAATTAGAAACCACTGGAGACActgaaataaacagagagataaacagaaa

Function

GO:

id name namespace
GO:0005978 glycogen biosynthetic process biological_process
GO:0005980 glycogen catabolic process biological_process
GO:0004134 4-alpha-glucanotransferase activity molecular_function
GO:0004135 amylo-alpha-1,6-glucosidase activity molecular_function

KEGG:

id description
K01196 AGL; glycogen debranching enzyme

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1616 lncRNA downstream 7973 3385373 ~ 3386231 (-) True G1214
TU1612 lncRNA downstream 20589 3368803 ~ 3373615 (-) True G1211
TU1371 lncRNA downstream 96558 3296240 ~ 3297646 (-) True G1013
TU1375 lncRNA downstream 99422 3294576 ~ 3294782 (-) True G1017
TU1374 lncRNA downstream 104286 3289505 ~ 3289918 (-) True G1016
TU1628 lncRNA upstream 28803 3474189 ~ 3474864 (-) True G1224
TU1670 lncRNA upstream 132843 3578229 ~ 3585540 (-) True G1238
TU1654 lncRNA upstream 150357 3595743 ~ 3599731 (-) True G1234
TU1664 lncRNA upstream 150357 3595743 ~ 3599731 (-) False G1234
TU1665 lncRNA upstream 150357 3595743 ~ 3599731 (-) False G1234
XM_007245151.2 mRNA downstream 11082 3376610 ~ 3383122 (-) True LOC103033290
XM_015604753.2 mRNA downstream 78183 3297813 ~ 3316021 (-) False olfml2b
XM_007245055.3 mRNA downstream 78183 3297813 ~ 3316021 (-) True olfml2b
XM_022673821.1 mRNA downstream 177183 3189007 ~ 3217021 (-) True LOC103033918
XM_022673759.1 mRNA downstream 214610 3163711 ~ 3179594 (-) False LOC111193343
XM_022674427.1 mRNA upstream 45486 3490872 ~ 3503293 (-) True LOC103028436
XM_022674557.1 mRNA upstream 71238 3516624 ~ 3554189 (-) False LOC103032346
XM_022674501.1 mRNA upstream 71238 3516624 ~ 3554178 (-) True LOC103032346
XM_022674646.1 mRNA upstream 158800 3604186 ~ 3666404 (-) True LOC103032017
XM_007237465.2 mRNA upstream 393483 3838869 ~ 3849326 (-) True ap1s3
TU1203 other downstream 425727 2910754 ~ 2968477 (-) True LOC103032016
TU1089 other downstream 839517 2550216 ~ 2554687 (-) False G807
XR_454399.3 other downstream 959803 2423713 ~ 2434401 (-) True znf414
TU795 other downstream 1521077 1864515 ~ 1873127 (-) True yipf1
XR_002648446.1 other downstream 2538044 855579 ~ 856160 (-) True LOC111197534
TU1713 other upstream 455497 3900883 ~ 3909663 (-) False wdfy1
TU1773 other upstream 654379 4099765 ~ 4101566 (-) True G1308
TU1837 other upstream 831957 4277343 ~ 4304762 (-) False LOC111193783
TU2412 other upstream 2265950 5711336 ~ 5712686 (-) False LOC103031123
TU2413 other upstream 2267356 5712742 ~ 5721108 (-) False LOC103031123

Expression Profile