RNA id: TU1654


Basic Information

Item Value
RNA id TU1654
length 2722
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G1234
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 3595743 ~ 3599731 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAGACTTATGAGTTGatttggactctagcctaaagacttatGAGTTGATTTGGATTCTAGCTAAAGACTTGTGAGTTGATTTGGACTCTAGCTAAAGACTTGTGAGTTGAATTGGACTCTAGCTAAAGACATATGAGTTGACTTGGATTCTAGCTAAGGAATTCTGAGTTGACTTGGATTCTAGCTAAAGAGTTATGagttgacttggactctagctgAAGAGTTATGagttgacttggactctagctgAAGAGTTATGagttgacttggactctagctgAAGAGTTATGAGTTGACTTGTCATGATTTGACTTGACTCCTAACTCATGACTTTATTTAACTCTagttgacttggactctagctgAAGAGTTATGagttgacttggactctagctgAAGAGTTATGagttgacttggactctagttGAAGAGTTATGagttgacttggactctagctgAAAAGTTATGAGTTGACTTGGACTTTGGCCTAAAGACTTATGAGTTGACTTGGACTCAAGCTAAAGACTTATTAGTTGACTTGAATGCTAGCTTAAAATGTATGAGTTTATTTGGACTCTACCTATAGATGTATGAGTTGACTTGGATTCTAGCTAAAGACTTGTGAGTTGATTTGGACTCTAGCTAAAGACTTGTGAGTTGAATTGGACTCTAGCTAAAGACATATGAGTTGACTTGGATTCTAGCTAAGGAATTCTGAGTTGACTTGGATTCTAGCTAAAGACTTATGAGTTGACTTGAACTCAAGCTAAGAGACTTATAaattgacttggactctagctgAAGAGTTATGAGTTGACCTGGACTAAAAACTTAACCTAAAGACTCATAACTTAATTTAGACTCTGGCTTGGAGACTTTTAACTTGACTTATGAGTTGATTTGGACTTTAGCTAAAGACGAATGAGTTGATTTgcactctagcctaaagacttatGAGTTGATTTGGACTCTAACCTGAAGACTGGTAAATTAATTTAGACTCTGCACTCGAGACTTGTAACTTGACTTGGACACTATCCAAAGACGTGACATttcttggactctagcctaaagacttgggacttttcttggactctagcctaaaggcTTGGGACTTttcttggactctagcctaaagacttgggacttttcttggactctagcctaaagacttgggacttttcttggactctagcctaaagacttgggACTTTTCTTGcctggactctagcctaaaggcTTGGGACTTttcttggactctagcctaaagacttgggacttttcttggactctagcctaaagacttgggACTTTTCTTGACTCTAGCCTAAAGGCTTGGGACTTttcttggactctagcctaaagacttgggacttttttttcctggactctagcctaaataCTTCTCATTTGATTTTAAGTTTAGCTTAAAGGCTCAGCAAAAATAtgtttgtgtctgttttttgtACGATAAGTCAGTAACATCATTTTCATGGCAGAACTTCACCTCCTAAAAATTGTCAAAACAAACCTGATTCCACAATGCAATGAAAAACTGCATCTGCACCAACTCTTAGTGGGTAAGACTGTTGACCCCTGGCTTAATATGTGAGACTAAGAGGCAGGCGAGACCttgtgagacagtgagacagtcTGAGATTCTGcaatagaaactgattcagtcgTGTCCCCTGGAGCAAAAACAGTAACAGTTGGTGATTGGTCGAATTAGTTCCAGTCACCACTCAGTTTAAGGCAGTTGTGTTTTTACTGGGAAAGTACAAGGCTGAGTTGAAACTGTGCATTTGTATCCTAGCCGCCTTGTTTACATCCTTGCTAATACCATGGTTTATTTTATGAACTTTTAATTtcaaattctaaaataaaaaaggccaaAAAAGAATGTAATTATAATCCCATAATAATCTTTAACATGGTGAGAGTTGTTTTGAATTTAGTCACTgtacagtataatttatttatatggaCAACCTTATTGAATTAGGTCATttttttggtcatatttatttatctatgtatttatttttgtttcattcgaatttagataatttacattaatatacatatacatattttcaaTGGAGTGTACGTACGTACGTCTTTATCAGAATATATCAGAAGTGAATTTTATATATGACTGTACAGTATAAATGTACCTTACATTATGGCTTTAAACTGATCTTACAGCTGCATGGTCATTTGATACTGTATGTACTCACTCtaacttttccttttttaagtttggtttggtttggttttgtaaATGATGCCTTTTCATGGTGATGGTTGGTACCTTGATTTATGCTCTACCGTGCATTCTGTTCAATCAGCTGAGTAACCGCTGGATCTTTGTACCTCTGTATATAGATATTTGTAACTTTGCGAGAGAACTCGTGTGGTAGTGCACATTGATTAGGAGACAGACGTTACTTTGGATAAAGTGTCAAACATTCATATGAAGATTTGCTTTTAGTAAAGATTTACAGGGTGCACATTCATTTCAGTGCCATAAAGAGATACTCTGAAATAACGAGGTTGAAAACGAACAAGCTTTTTTTTGGAGTTAACTTTTAGAACGTCAAACGATAACCGGACATTTTCAGCCCTATGAggttttgctttgtgttttgaTTGGGGATGGTATGATGATATGTCTTATACatattgaaataaatgtttGGTATCAAGGTTAACCAAGAA

Function

GO: NA

KEGG:

id description
ko05014 Amyotrophic lateral sclerosis
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1670 lncRNA downstream 10203 3578229 ~ 3585540 (-) True G1238
TU1628 lncRNA downstream 120879 3474189 ~ 3474864 (-) True G1224
TU1621 lncRNA downstream 180631 3413685 ~ 3415112 (-) False LOC103029371
TU1616 lncRNA downstream 209512 3385373 ~ 3386231 (-) True G1214
TU1612 lncRNA downstream 222128 3368803 ~ 3373615 (-) True G1211
TU1679 lncRNA upstream 18501 3618232 ~ 3650378 (-) True G1247
TU1703 lncRNA upstream 279833 3879564 ~ 3881731 (-) True G1267
TU1735 lncRNA upstream 406431 4006162 ~ 4007028 (-) False G1290
TU1740 lncRNA upstream 407372 4007103 ~ 4009880 (-) True G1290
TU1759 lncRNA upstream 479806 4079537 ~ 4081783 (-) True G1301
XM_022674557.1 mRNA downstream 41554 3516624 ~ 3554189 (-) False LOC103032346
XM_022674501.1 mRNA downstream 41565 3516624 ~ 3554178 (-) True LOC103032346
XM_022674427.1 mRNA downstream 92450 3490872 ~ 3503293 (-) True LOC103028436
XM_022671241.1 mRNA downstream 150357 3394204 ~ 3445386 (-) True LOC103029371
XM_007245151.2 mRNA downstream 212621 3376610 ~ 3383122 (-) True LOC103033290
XM_022674646.1 mRNA upstream 4455 3604186 ~ 3666404 (-) True LOC103032017
XM_007237465.2 mRNA upstream 239138 3838869 ~ 3849326 (-) True ap1s3
XM_022674974.1 mRNA upstream 282639 3882370 ~ 3909671 (-) True wdfy1
XM_007237463.3 mRNA upstream 327369 3927100 ~ 3957131 (-) True serpine2
XM_022675108.1 mRNA upstream 369489 3969220 ~ 4005230 (-) True LOC103026864
TU1203 other downstream 627266 2910754 ~ 2968477 (-) True LOC103032016
TU1089 other downstream 1041056 2550216 ~ 2554687 (-) False G807
XR_454399.3 other downstream 1161342 2423713 ~ 2434401 (-) True znf414
TU795 other downstream 1722616 1864515 ~ 1873127 (-) True yipf1
XR_002648446.1 other downstream 2739583 855579 ~ 856160 (-) True LOC111197534
TU1713 other upstream 301152 3900883 ~ 3909663 (-) False wdfy1
TU1773 other upstream 500034 4099765 ~ 4101566 (-) True G1308
TU1837 other upstream 677612 4277343 ~ 4304762 (-) False LOC111193783
TU2412 other upstream 2111605 5711336 ~ 5712686 (-) False LOC103031123
TU2413 other upstream 2113011 5712742 ~ 5721108 (-) False LOC103031123

Expression Profile