RNA id: TU1735


Basic Information

Item Value
RNA id TU1735
length 394
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G1290
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 4006162 ~ 4009880 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccacttagcaaccacttagcaaccactaggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaacgatagcaactgcctagcaaccacttagcaacaccttagcaaccactaggaaaacgttagcaactgcctagcaaccactttagaaatgatagcaactgcctagcaaccacttaacaacatcttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccatgtggaatatgttagcaactgcctagcaactgcttagcaaccactttagaaatgatagcaactgcctagcaaccagttagctacactTTAGccaccacttggaaaacgttagcaactgcttagcaacaccctagcaaccactt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1703 lncRNA downstream 124431 3879564 ~ 3881731 (-) True G1267
TU1679 lncRNA downstream 355784 3618232 ~ 3650378 (-) True G1247
TU1654 lncRNA downstream 406431 3595743 ~ 3599731 (-) True G1234
TU1740 lncRNA upstream 75 4007103 ~ 4009880 (-) True G1290
TU1759 lncRNA upstream 72509 4079537 ~ 4081783 (-) True G1301
TU1792 lncRNA upstream 149573 4156601 ~ 4156840 (-) True G1323
TU1793 lncRNA upstream 154451 4161479 ~ 4161873 (-) True G1324
TU1831 lncRNA upstream 259973 4267001 ~ 4269362 (-) False LOC111193794
XM_022675108.1 mRNA downstream 932 3969220 ~ 4005230 (-) True LOC103026864
XM_007237463.3 mRNA downstream 49031 3927100 ~ 3957131 (-) True serpine2
XM_022674974.1 mRNA downstream 96491 3882370 ~ 3909671 (-) True wdfy1
XM_007237465.2 mRNA downstream 156836 3838869 ~ 3849326 (-) True ap1s3
XM_022674646.1 mRNA downstream 339758 3604186 ~ 3666404 (-) True LOC103032017
XM_022675212.1 mRNA upstream 27428 4034456 ~ 4037520 (-) False LOC111193700
XM_022675170.1 mRNA upstream 27428 4034456 ~ 4037520 (-) True LOC111193700
XM_022675272.1 mRNA upstream 45459 4052487 ~ 4052783 (-) True LOC111193716
XM_022675554.1 mRNA upstream 115090 4122118 ~ 4127226 (-) True med29
XM_022671270.1 mRNA upstream 142665 4149693 ~ 4207523 (-) True dnhd1
TU1713 other downstream 96499 3900883 ~ 3909663 (-) False wdfy1
TU1203 other downstream 1037685 2910754 ~ 2968477 (-) True LOC103032016
TU1089 other downstream 1451475 2550216 ~ 2554687 (-) False G807
XR_454399.3 other downstream 1571761 2423713 ~ 2434401 (-) True znf414
TU795 other downstream 2133035 1864515 ~ 1873127 (-) True yipf1
TU1773 other upstream 92737 4099765 ~ 4101566 (-) True G1308
TU1837 other upstream 270315 4277343 ~ 4304762 (-) False LOC111193783
TU2412 other upstream 1704308 5711336 ~ 5712686 (-) False LOC103031123
TU2413 other upstream 1705714 5712742 ~ 5721108 (-) False LOC103031123
TU3335 other upstream 5741904 9748932 ~ 9755744 (-) False hspa13

Expression Profile