RNA id: TU3766


Basic Information

Item Value
RNA id TU3766
length 1507
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G2888
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11116380 ~ 11117963 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttgttaaGCAGGTGGAGACTTACTCGTTTTtcaaaaatgaacaatgttaaTGTCACATGACCATGGGTGCCAAAAATGTGCATAAGaatgtatatacacacaaactacaTGTACACGTTTGTATGCACTCCTTCTAATGAATTCTAATGAATTTAATGaatgacacacatacacacacagtttatctattatctgtagTTAGAAAacgtactgccaatagaatatgactctctgaagcagatatACACTAAATAAATCTAGTAGAAAACCCTTAGTGGATGGTCCCTGGAGAGTAGAGACTGTTACTCAGTTACTAAGGCAAGATAAAGGTCTTTTTAACACTTCTAATTTTGAATGAAACCATGAATGTGCAGGagccccaatacttttgttcatatagtgCAGATACTTTAAGGGAAATGAAACACCGTCTACCCCACTATAGCCCTCTATGGATGGGATTCGTTTcttagggggacgtctgtgaaacttttttcacacttctactcagtgctaaaactcttgcatctagACTGCAATtggaaaaacaggaggaccagtgagatTTTTGGATTTATCAGTCACGTcacattgcgttcagtagctcctccatttccacttgctgttgtgtttacgtagaTCTCTGCGTAAACACACTCCCAAACCGTAATTACAGTGTGTGGCAgtagacaaatagctattttattaaacaagtcCAGACAGGGTCAAATTACCGGacgaccacagagttcagcaaaaaacagtagataattcagtctgtaattttctcaaaggACGTCTGAAAAgaacacatacatggttgttctggaTAGGAATAAAATCACTGAGGACCccctataaaaaagaaaaattacctCCCAATTCATACCTCCCAATTCATTTGGGAGAAACTAATCCTTAAGGGCTTAAGACAGATATATTGTTCTGCAGTGCCATTACACATGTGTGTGAATGAACTCTCTATACCAGATTTCAAGAAGCACAGagtagaaagaaaaaacaaaaaccgtCTCATTGTGTCATGCAGGCTATTAATGCACATGAATGCAGGCACACGCATACACTCACATACATGAACAGAGACACATTCTGCTGTaggcagtaataataatagttataataataatacaaaataggACTATCTATGGTACACAATATATGTGCTTGGTGGTGGTCAAATTCTTTTCCTggtgcacaaaaacacacacacacacacacacacacacacacacacatccattcaCACAAACCCTGAGCTTGGggtttttaccaaaaaaaaaaaaaggaaagcacaACCCTGACTGGATCGGGGCCTATTCTCCCCAGCCTGTGATGTATATGTCCATATTTCTCAGCGTCTTCAGTGTGCAGAGATTCTATTGTGCGCCGGTGTAGGAATAATCTGCCTTGTTGTGCATCACCAACTTGTTGTCCACAAAGTAGAAGCTGTCAGACTGAGTCTCGTACGGGTGCAGGATCATCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3759 lncRNA downstream 3574 11092170 ~ 11112806 (-) True G2881
TU3735 lncRNA downstream 45141 11071033 ~ 11071239 (-) True G2865
TU3724 lncRNA downstream 118300 10997852 ~ 10998080 (-) True G2857
TU3703 lncRNA downstream 332240 10783804 ~ 10784140 (-) True G2837
TU3701 lncRNA downstream 332893 10783148 ~ 10783487 (-) True G2835
TU3780 lncRNA upstream 43864 11161827 ~ 11162073 (-) True G2897
TU3933 lncRNA upstream 306671 11424634 ~ 11425258 (-) True G3010
TU3940 lncRNA upstream 344697 11462660 ~ 11466549 (-) True G3013
TU3991 lncRNA upstream 613552 11731515 ~ 11754015 (-) True G3055
TU3999 lncRNA upstream 637332 11755295 ~ 11760809 (-) True G3062
XM_022683219.1 mRNA downstream 32497 11080848 ~ 11083883 (-) True LOC103042223
XM_015602259.2 mRNA downstream 32506 11080848 ~ 11083874 (-) False LOC103042223
XM_022683158.1 mRNA downstream 40015 11072398 ~ 11076365 (-) True LOC103043674
XM_022683090.1 mRNA downstream 359494 10753104 ~ 10756886 (-) False LOC111195508
XM_022683060.1 mRNA downstream 359494 10753104 ~ 10756886 (-) True LOC111195508
XM_022683325.1 mRNA upstream 2844 11120807 ~ 11135302 (-) True foxn1
XM_022683451.1 mRNA upstream 163246 11281209 ~ 11293882 (-) False sarm1
XM_007232334.3 mRNA upstream 163246 11281209 ~ 11293882 (-) True sarm1
XM_022683738.1 mRNA upstream 186627 11304590 ~ 11308672 (-) False lrrc72
XM_022683647.1 mRNA upstream 186627 11304590 ~ 11308664 (-) True lrrc72
TU3680 other downstream 431915 10662422 ~ 10684465 (-) False LOC103025442
TU3640 other downstream 533633 10582289 ~ 10582747 (-) True G2783
XR_002651630.1 other downstream 756714 10247465 ~ 10359666 (-) False rap1gap2
TU3335 other downstream 1360636 9748932 ~ 9755744 (-) False hspa13
TU2413 other downstream 5395272 5712742 ~ 5721108 (-) False LOC103031123
XR_002651739.1 other upstream 163246 11281209 ~ 11293882 (-) False sarm1
TU4317 other upstream 1622181 12740144 ~ 12758513 (-) True G3297
TU4408 other upstream 2012249 13130212 ~ 13135641 (-) True LOC111197384
XR_002648804.1 other upstream 3006819 14124782 ~ 14132536 (-) False LOC111189390
XR_002648814.1 other upstream 3007165 14125128 ~ 14132536 (-) False LOC111189390

Expression Profile