RNA id: TU3940


Basic Information

Item Value
RNA id TU3940
length 1170
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G3013
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11462660 ~ 11466549 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

accacagataaaatattaataaatgtaaatattgctctactgcatatacagctctggaaaaaaagagaccacttaaaatggtgagtttctatgattttaccaaattgaaaacttctggaatataatcaagaggaagatggatgatcacaagccatcaaaccaagctgaactgctttaatttttgcaccaggagtggcattaagttatccaaaagcagtgtgtaagactggtggaggagaacatgccaagatgcatgaaaactgtgattaaaaaaacagggttattccactaaatattgatttctgaactcttagaactttatgaatatgatattgttttctttgcattatttgaggtctgaaagctctgcatctttattattatttcagtcatttctcattttctgcaaataaacgctctaaatgacaatattttaatttggaatttgggaaaaatcttgtccgtagtttatcgaataaaacaacaatgttcattttatccaaacataaacctataaatagcaaaaccagagaaactgattcagagatTGAATTggtctttttcttgtttttttccagagctgtatttaatacTCTGTTTAGATTAGAATATGTAATTTTGTGACTTGCACAATATACTACTTGTAGTATATGTAACCTCAGcctctgtgttttctttcttcttcatcATTTGTTGATGTCTTTCTTTAAGAGGTCTAGCATGCTCATACATGGGTTTATGTCTCTGCATGGAGGAAATAATTTcaaaaatagagagagggaactctccaataataaacaataacacaaacataaataaataaataaataaataaataaataatgagatGTGTGGACGAGGCCAAAAGGAGGAATATCtataatgtatgtataaatatactACAGCACTGCTGTAAAACACATCAGGGCCATAAATATCACTAAGAGTTAGTTAAAAGATTAAATGCTTACCTCTGTGTGGATCCAGAACTGGTAGAGCAAGTTAAACTGAATGTGAACAGCAAAGACTGACGGTGGAACTATCAAGGCCATTGGAAGATAGAACCCCATGAGGCGCACTGCTGGGTGACGGACTGTCgcagtgctgtggtcagattGTAGTACTCTGAGCTGTGATGAACTTGATGAGCAGCCCACAGAAGATTTAcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3933 lncRNA downstream 37402 11424634 ~ 11425258 (-) True G3010
TU3780 lncRNA downstream 300587 11161827 ~ 11162073 (-) True G2897
TU3766 lncRNA downstream 344697 11116380 ~ 11117963 (-) True G2888
TU3759 lncRNA downstream 349854 11092170 ~ 11112806 (-) True G2881
TU3735 lncRNA downstream 391421 11071033 ~ 11071239 (-) True G2865
TU3991 lncRNA upstream 264966 11731515 ~ 11754015 (-) True G3055
TU3999 lncRNA upstream 288746 11755295 ~ 11760809 (-) True G3062
TU4000 lncRNA upstream 292659 11759208 ~ 11759827 (-) False G3062
TU4005 lncRNA upstream 295820 11762369 ~ 11762575 (-) True G3066
TU4006 lncRNA upstream 296085 11762634 ~ 11762984 (-) True G3067
XM_022683738.1 mRNA downstream 153988 11304590 ~ 11308672 (-) False lrrc72
XM_022683647.1 mRNA downstream 153996 11304590 ~ 11308664 (-) True lrrc72
XM_015601043.2 mRNA downstream 153997 11304590 ~ 11308663 (-) False lrrc72
XM_022683783.1 mRNA downstream 154002 11304590 ~ 11308658 (-) False lrrc72
XM_022683451.1 mRNA downstream 168778 11281209 ~ 11293882 (-) False sarm1
XM_007232339.2 mRNA upstream 243076 11709625 ~ 11713271 (-) True arl4a
XM_007232340.3 mRNA upstream 247572 11714121 ~ 11726198 (-) True LOC103024995
XM_007232357.3 mRNA upstream 301006 11767555 ~ 11777303 (-) True LOC103030898
XM_007232341.3 mRNA upstream 311029 11777578 ~ 11787142 (-) True tmem106b
XM_022671366.1 mRNA upstream 457453 11924002 ~ 11940744 (-) True LOC111192956
XR_002651739.1 other downstream 168778 11281209 ~ 11293882 (-) False sarm1
TU3680 other downstream 778195 10662422 ~ 10684465 (-) False LOC103025442
TU3640 other downstream 879913 10582289 ~ 10582747 (-) True G2783
XR_002651630.1 other downstream 1102994 10247465 ~ 10359666 (-) False rap1gap2
TU3335 other downstream 1706916 9748932 ~ 9755744 (-) False hspa13
TU4317 other upstream 1273595 12740144 ~ 12758513 (-) True G3297
TU4408 other upstream 1663663 13130212 ~ 13135641 (-) True LOC111197384
XR_002648804.1 other upstream 2658233 14124782 ~ 14132536 (-) False LOC111189390
XR_002648814.1 other upstream 2658579 14125128 ~ 14132536 (-) False LOC111189390
XR_002648788.1 other upstream 2660820 14127369 ~ 14132536 (-) False LOC111189390

Expression Profile