RNA id: TU4122


Basic Information

Item Value
RNA id TU4122
length 803
lncRNA type sense_over
GC content 0.34
exon number 3
gene id LOC111192956
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11924002 ~ 11940744 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATATTTCCAGTCCAGAGTTAACTGTGTTTTTGTAAAAGTGTATGGCTCCCCCGCTGCAAAAAGCCTGCAGTGTGTGGAGcggtagagcttagatcgggcccaaaaatccagcccgacccgGCCCAAATCCATGCACTTTCTGCCCGAGCCAGACCCGACCTGAGCCATAAACTGTCCTTCTGAACCCGAGCCATTTTTTAGTAATTAGAGCGTTAAAATTGagctatttaaaacattttcgggctgtttgaattaGCGAAATCTGTtaagaattatgttaaataacctTGCGAcgctgaagaagcatagacctattattatttctttttttttattcgcttctttctttctttattccttGTCTGTTGTACAGGCAGTGTGAGGTTGGTGGATGGTGGCAGTCGCtgtgctgggagagtggaggttcttcatggagagagctgggtcacagtgtgtgatgctgactttaaccagcagggtgcagaggttgtgtgtcgagagctgggctgtggttctcctgtgaaggttctgggagcagctgcttttggtagaggggagggtcaggtgtggtcagaggagcttcagtgtagaggaaacgaatctcagattcacttctgtccaaaatcatcttcactcaaacacaactgcTCCCATGATAATGATGTGGGACTGGTGTGTGCTGACAGTGTGAGGTTGGTGGATGGTGGCCATCGCtgtgctgggagagtggaggttttTTATAGAGGACAGTGGGGATCAGTGTGTGGTAATAACTGGGATATGAGAGATGCTGCAGTGGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4117 lncRNA downstream 551 11928854 ~ 11932452 (-) False LOC111192956
TU4146 lncRNA downstream 14658 11917874 ~ 11918345 (-) True G3161
TU4148 lncRNA downstream 23990 11906933 ~ 11909013 (-) True G3163
TU4104 lncRNA downstream 43757 11887968 ~ 11889246 (-) True G3150
TU4103 lncRNA downstream 48304 11884305 ~ 11884699 (-) True G3149
TU4272 lncRNA upstream 631072 12568302 ~ 12569570 (-) True G3263
TU4277 lncRNA upstream 639537 12576767 ~ 12578411 (-) True G3268
TU4322 lncRNA upstream 778873 12716103 ~ 12720619 (-) True G3301
TU4315 lncRNA upstream 822032 12759262 ~ 12762601 (-) False sgcg
TU4316 lncRNA upstream 822032 12759262 ~ 12762601 (-) False sgcg
XM_007232341.3 mRNA downstream 145861 11777578 ~ 11787142 (-) True tmem106b
XM_007232357.3 mRNA downstream 155700 11767555 ~ 11777303 (-) True LOC103030898
XM_007232340.3 mRNA downstream 206805 11714121 ~ 11726198 (-) True LOC103024995
XM_007232339.2 mRNA downstream 219732 11709625 ~ 11713271 (-) True arl4a
XM_022683783.1 mRNA downstream 624345 11304590 ~ 11308658 (-) False lrrc72
XM_007236706.3 mRNA upstream 9240 11946470 ~ 11976692 (-) True LOC103031554
XM_007236705.3 mRNA upstream 80785 12018015 ~ 12214741 (-) True gbe1
XM_007234502.2 mRNA upstream 678424 12615654 ~ 12626454 (-) False LOC103022193
XM_007234501.2 mRNA upstream 678424 12615654 ~ 12626454 (-) True LOC103022193
XM_015601632.2 mRNA upstream 730805 12668035 ~ 12706109 (-) False LOC103022701
XR_002651739.1 other downstream 639121 11281209 ~ 11293882 (-) False sarm1
TU3680 other downstream 1248538 10662422 ~ 10684465 (-) False LOC103025442
TU3640 other downstream 1350256 10582289 ~ 10582747 (-) True G2783
XR_002651630.1 other downstream 1573337 10247465 ~ 10359666 (-) False rap1gap2
TU3335 other downstream 2177259 9748932 ~ 9755744 (-) False hspa13
TU4317 other upstream 802914 12740144 ~ 12758513 (-) True G3297
TU4408 other upstream 1192982 13130212 ~ 13135641 (-) True LOC111197384
XR_002648804.1 other upstream 2187552 14124782 ~ 14132536 (-) False LOC111189390
XR_002648814.1 other upstream 2187898 14125128 ~ 14132536 (-) False LOC111189390
XR_002648788.1 other upstream 2190139 14127369 ~ 14132536 (-) False LOC111189390

Expression Profile