RNA id: TU4572


Basic Information

Item Value
RNA id TU4572
length 269
lncRNA type sense_over
GC content 0.32
exon number 2
gene id G3469
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 13680519 ~ 13721025 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGGTAATAATTCTTCACATTGCCTACAATTGGAGTAACAAGGATATGTCAGTTTGATTTAGCAACTTTATTTAAACAGgaagaagagagacagaaataactGCCTATTAGCTGTGTTTCTCTCAAATTTCAAATGGCGGCCTACCGGTAGAGACTTTGTCCACCCTTCACACTAACACCAGGAGGTGAGTAAACACCACAATTAAACAactaaacaaacacattaactctctctctctctctctctctctctcacacacacacacaca

Function

GO:

id name namespace
GO:0008210 estrogen metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4557 lncRNA downstream 5947 13674108 ~ 13674572 (-) True G3459
TU4534 lncRNA downstream 108147 13544500 ~ 13572372 (-) False slc43a2
XR_002652513.1 lncRNA downstream 295572 13381254 ~ 13384947 (-) True LOC111197623
TU4402 lncRNA downstream 529515 13147138 ~ 13151004 (-) False G3356
TU4403 lncRNA downstream 529515 13147138 ~ 13151004 (-) True G3356
TU4757 lncRNA upstream 403148 14124173 ~ 14133237 (-) False LOC111189390
TU4755 lncRNA upstream 407313 14128338 ~ 14133237 (-) False LOC111189390
TU4758 lncRNA upstream 407313 14128338 ~ 14131354 (-) False LOC111189390
TU4803 lncRNA upstream 526617 14247642 ~ 14247859 (-) True G3610
XR_002649055.1 lncRNA upstream 560007 14281032 ~ 14318897 (-) True LOC111190296
XM_007260885.3 mRNA downstream 21595 13591095 ~ 13658924 (-) False myo1c
XM_007260887.3 mRNA downstream 30384 13591095 ~ 13650135 (-) True myo1c
XM_007260886.3 mRNA downstream 49506 13591095 ~ 13631013 (-) False myo1c
XM_007260884.3 mRNA downstream 62819 13591095 ~ 13617700 (-) False myo1c
XM_007260889.3 mRNA downstream 99052 13574774 ~ 13581467 (-) True LOC103046123
XM_022662993.1 mRNA upstream 13448 13734473 ~ 13750279 (-) False LOC103025751
XM_022663041.1 mRNA upstream 13448 13734473 ~ 13750279 (-) False LOC103025751
XM_022662931.1 mRNA upstream 13448 13734473 ~ 13750279 (-) True LOC103025751
XM_022662980.1 mRNA upstream 13448 13734473 ~ 13750278 (-) False LOC103025751
XM_022663131.1 mRNA upstream 406344 14127369 ~ 14132535 (-) False LOC111189390
TU4408 other downstream 544878 13130212 ~ 13135641 (-) True LOC111197384
TU4317 other downstream 922006 12740144 ~ 12758513 (-) True G3297
XR_002651739.1 other downstream 2386637 11281209 ~ 11293882 (-) False sarm1
TU3680 other downstream 2996054 10662422 ~ 10684465 (-) False LOC103025442
TU3640 other downstream 3097772 10582289 ~ 10582747 (-) True G2783
XR_002648804.1 other upstream 403757 14124782 ~ 14132536 (-) False LOC111189390
XR_002648814.1 other upstream 404103 14125128 ~ 14132536 (-) False LOC111189390
XR_002648788.1 other upstream 406344 14127369 ~ 14132536 (-) False LOC111189390
XR_002648822.1 other upstream 406412 14127437 ~ 14132536 (-) False LOC111189390
TU4805 other upstream 562598 14283623 ~ 14284225 (-) True G3612

Expression Profile