RNA id: XM_007232339.2


Basic Information

Item Value
RNA id XM_007232339.2
length 1540
RNA type mRNA
GC content 0.38
exon number 2
gene id arl4a
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11709625 ~ 11713271 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGGGAGCGGCTACGTGCCCGCGGTCTGTCCGGGTTCAGTGCGGTGAGAGAGGCGCTGTGGTGCGGAGGAGCAGAGCTGGGGTTAGAGCTGAAACTTTTAACCCACATTAAAGTCCCTGTGGCATTCTTGGAGCACAAGCATTTGGAGTCGGGGAAAAGATATGGATTTCTCCTGGTTCATCTGAGATCACACCAGAAGCCAAAATGGGGAATGGGATGTCAGATCAGACCGGCCTACTTTCAAATCTTCCCTGTTTTAAGTCTGTCCACATTGCTATATTGGGTCTGGACTCAGCAGGGAAAACCACTGTGCTTTACAGACTACAATTCAACGAATTTGTGAACACTGTTCCCACTAAAGGATTCAATTCAGAGAAGGTAAAAGTAACACTTGGAGACTCCAGAACAGTGTCTTTTCACTTCTGGGATGTTGGTGGTCAGGAAAAGCTCCGTCCACTCTGGAAGTCCTACACTCGCTGCACGGACGGCATTGTGTTCGTAGTGGATTCGGTGGATGCTGAGAGGATGGAGGAAGCCAAAACAGAACTGCACAAGATCGCACGTTCCTCAGAGACTCAAGGTGTACCTGTGCTTATTGTTGCAAACAAGCAGGACCTAAGACACGCTTTGTCTGTGGAAGAGATTAAGAAGATGCTGGCACTTGGAGAGCTGGCCTCCATCACACCATGGCATTTACAGCCAACATGTGCCATAATAGGTGATGGACTAAAAGAAGGACTGGAAAAActgtatgatatgatattgaAACGgaagaaaatgttaaaacagcagaaaaagaagtgaatattttaaagtattaaaaaagatGAAAATGTTATATGAAGTGAtatgttctgtatttttatattatgacTGAGTTTTATCAGTTTCACAGTCTTGTGTTTTGCTAAATATTAAAGCCAATGTTTTCTTACTGTAGGATTCTGTCACCATATTAAAAGCTAATGGGCTTTAAAAACTAGTACAAAatgaattatacagtatatgtttattttttacttgacTCTTTGTGAAATGGAAACTATCTGTATATACCCTACTTGAGAAGTACAGATCTTTCTGAAACTTACTGAATGAATGTGCTAAGGAAATGAGACTAGTAAGGGTGTTTGTTAGTCAGGAGAACTCATGTATGTGAGAAACTGAAAGCTTTTTGTGAGTAAATATAAGAATGATAACACAGAAGGACATCTAAACAACAGGAATCCACATCAGCTGCTTTAATTCACAGTATGTTTGTCTTCTAAAGGGTGTCGCTTTCCCAAGAAAGtgctttgtctgtttttttttctatcatagTCTTGTTTACTTTTCTATATTCTGTAACTAAGAAACATGTTTACAGCACTTTagatatgatatattttagtgatattaAGTCTgacttaatattaaaaatgttaatcttAATCTAAAAGATGAAGCTTGAAAGAAATGTTCTTGTCACTGAAGTCTTTAGTCTGCAATACATATATCTGAAGTAAAAgcaaattttaataaattaatctaTATCTCAGTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07945 ARL4; ADP-ribosylation factor-like protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3940 lncRNA downstream 243076 11462660 ~ 11466549 (-) True G3013
TU3933 lncRNA downstream 284367 11424634 ~ 11425258 (-) True G3010
TU3780 lncRNA downstream 547552 11161827 ~ 11162073 (-) True G2897
TU3766 lncRNA downstream 591662 11116380 ~ 11117963 (-) True G2888
TU3759 lncRNA downstream 596819 11092170 ~ 11112806 (-) True G2881
TU3991 lncRNA upstream 18244 11731515 ~ 11754015 (-) True G3055
TU3999 lncRNA upstream 42024 11755295 ~ 11760809 (-) True G3062
TU4000 lncRNA upstream 45937 11759208 ~ 11759827 (-) False G3062
TU4005 lncRNA upstream 49098 11762369 ~ 11762575 (-) True G3066
TU4006 lncRNA upstream 49363 11762634 ~ 11762984 (-) True G3067
XM_022683738.1 mRNA downstream 400953 11304590 ~ 11308672 (-) False lrrc72
XM_022683647.1 mRNA downstream 400961 11304590 ~ 11308664 (-) True lrrc72
XM_015601043.2 mRNA downstream 400962 11304590 ~ 11308663 (-) False lrrc72
XM_022683783.1 mRNA downstream 400967 11304590 ~ 11308658 (-) False lrrc72
XM_022683451.1 mRNA downstream 415743 11281209 ~ 11293882 (-) False sarm1
XM_007232340.3 mRNA upstream 850 11714121 ~ 11726198 (-) True LOC103024995
XM_007232357.3 mRNA upstream 54284 11767555 ~ 11777303 (-) True LOC103030898
XM_007232341.3 mRNA upstream 64307 11777578 ~ 11787142 (-) True tmem106b
XM_022671366.1 mRNA upstream 210731 11924002 ~ 11940744 (-) True LOC111192956
XM_007236706.3 mRNA upstream 233199 11946470 ~ 11976692 (-) True LOC103031554
XR_002651739.1 other downstream 415743 11281209 ~ 11293882 (-) False sarm1
TU3680 other downstream 1025160 10662422 ~ 10684465 (-) False LOC103025442
TU3640 other downstream 1126878 10582289 ~ 10582747 (-) True G2783
XR_002651630.1 other downstream 1349959 10247465 ~ 10359666 (-) False rap1gap2
TU3335 other downstream 1953881 9748932 ~ 9755744 (-) False hspa13
TU4317 other upstream 1026873 12740144 ~ 12758513 (-) True G3297
TU4408 other upstream 1416941 13130212 ~ 13135641 (-) True LOC111197384
XR_002648804.1 other upstream 2411511 14124782 ~ 14132536 (-) False LOC111189390
XR_002648814.1 other upstream 2411857 14125128 ~ 14132536 (-) False LOC111189390
XR_002648788.1 other upstream 2414098 14127369 ~ 14132536 (-) False LOC111189390

Expression Profile