RNA id: XM_007232340.3


Basic Information

Item Value
RNA id XM_007232340.3
length 1438
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC103024995
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11714121 ~ 11726198 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCACAGAGGCCTCAGCTCCCCACTGTCTAactactgactgactgactggctgaCAGATGCCTGAACTGCACAGGTCAACTTTACTTCCAGAAATGACCTTGTTTCAGGATAACATGCACACATCAATGAATTCTGCACATATATCTGATTCAGCAACATCCATTCACTTCAACAGAAAGCTCCTgttctcagccaatcaaaaaTTTATCTCCTCTCGGGGTCATAGGCTCAGCCGGCTGAATACAACTGCCAGTCagaccgacttgtggaacataAAGCCCCCTGACTTTACCCCGAAACTGTACAGGTCACTAAGCTTACCACAGATTAAAAAGAAAACCCTTGACCCGGCCATACCCAGAGAGAGTCTGAGACAAACATCTCTATTCCTTTTACCAAACCTGGAAAAGAAGATGACTGAACCATCGTTTATCAGGTCGTATAAAGCCCCTGACCTGCTGGAGTCACAGCTGCTGTTTGTGAAGTCAGGACAGTATCCCAACCTTCCTTACAAAAACCCAAAACCCCACAATTTTAGACCATGTGCTGACAACATGCCTGATATGGTCACCACCATAGAAAAGGATCCTGGGAATTTGAAGTTTAAGTCTCAGTACTTGGAATCAAAAATTGTTGAACCCAGCCTTTGTCAGAGAGAAGAACTGAGAAAAATAGACACCTTCAAACCAGCAGAACTCAAGTGGGATTCCAAACTCATACTGCCAAAATCCCCCTGGCCACCGAAGTCAGCTTCATACACGagGCATCGGCGCAGAAGAGGAGTGTACAGTGCTTTTATGGATCGTGTGGAGGAGAAGCTCACCAGGTCTTGGATGAAAGAATAATGAgacaaaatcattttaaaaaccaCAGTAGAGCTGTGAAGTGGACTGTAGAAGGAATTTAGACATTTTAAGTGAGATTCCAAACCACAGGAAGTGGAAGCTTTCAGATAAAAGGGAACTTCAGAGAACATAGGAAGTAGTGAATATCAGTTTATTACTTCATatgaaactgattttttttactcatctGTCACAACACAATGGAAACATCACATCAACCTGTTGTATACCcataaaatcacatttatttccattttacatacaaaaaatgATAGACTGCTGCAGCTCATTTGTTTGCTAGTTACTTTAGCAGGCAAAGAAGCTGCTGAAGAATATTGTTAACCCAGCTAGGGCTGgacaaaatatgaatatgaatagaAATTAATAAGTGGGGATTTACCTAAATGATGTATATTCCCTTAGCCAGTATTAAATACTTAGTATGTACGAAATGCTTTGGCACTGCTTAAGAACCCTGTGGAATGGAATTCAACTTGTGTTACATTGGTCTTACAGTGGTCCTTTCTTTCATAATAAAATGTCAGCTTGTTTGCACTGTAGTCACCGCaggtacaaaataaaagtcaaatcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3940 lncRNA downstream 247572 11462660 ~ 11466549 (-) True G3013
TU3933 lncRNA downstream 288863 11424634 ~ 11425258 (-) True G3010
TU3780 lncRNA downstream 552048 11161827 ~ 11162073 (-) True G2897
TU3766 lncRNA downstream 596158 11116380 ~ 11117963 (-) True G2888
TU3759 lncRNA downstream 601315 11092170 ~ 11112806 (-) True G2881
TU3991 lncRNA upstream 5317 11731515 ~ 11754015 (-) True G3055
TU3999 lncRNA upstream 29097 11755295 ~ 11760809 (-) True G3062
TU4000 lncRNA upstream 33010 11759208 ~ 11759827 (-) False G3062
TU4005 lncRNA upstream 36171 11762369 ~ 11762575 (-) True G3066
TU4006 lncRNA upstream 36436 11762634 ~ 11762984 (-) True G3067
XM_007232339.2 mRNA downstream 850 11709625 ~ 11713271 (-) True arl4a
XM_022683738.1 mRNA downstream 405449 11304590 ~ 11308672 (-) False lrrc72
XM_022683647.1 mRNA downstream 405457 11304590 ~ 11308664 (-) True lrrc72
XM_015601043.2 mRNA downstream 405458 11304590 ~ 11308663 (-) False lrrc72
XM_022683783.1 mRNA downstream 405463 11304590 ~ 11308658 (-) False lrrc72
XM_007232357.3 mRNA upstream 41357 11767555 ~ 11777303 (-) True LOC103030898
XM_007232341.3 mRNA upstream 51380 11777578 ~ 11787142 (-) True tmem106b
XM_022671366.1 mRNA upstream 197804 11924002 ~ 11940744 (-) True LOC111192956
XM_007236706.3 mRNA upstream 220272 11946470 ~ 11976692 (-) True LOC103031554
XM_007236705.3 mRNA upstream 291817 12018015 ~ 12214741 (-) True gbe1
XR_002651739.1 other downstream 420239 11281209 ~ 11293882 (-) False sarm1
TU3680 other downstream 1029656 10662422 ~ 10684465 (-) False LOC103025442
TU3640 other downstream 1131374 10582289 ~ 10582747 (-) True G2783
XR_002651630.1 other downstream 1354455 10247465 ~ 10359666 (-) False rap1gap2
TU3335 other downstream 1958377 9748932 ~ 9755744 (-) False hspa13
TU4317 other upstream 1013946 12740144 ~ 12758513 (-) True G3297
TU4408 other upstream 1404014 13130212 ~ 13135641 (-) True LOC111197384
XR_002648804.1 other upstream 2398584 14124782 ~ 14132536 (-) False LOC111189390
XR_002648814.1 other upstream 2398930 14125128 ~ 14132536 (-) False LOC111189390
XR_002648788.1 other upstream 2401171 14127369 ~ 14132536 (-) False LOC111189390

Expression Profile