RNA id: XM_007232341.3


Basic Information

Item Value
RNA id XM_007232341.3
length 2933
RNA type mRNA
GC content 0.38
exon number 8
gene id tmem106b
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11777578 ~ 11787142 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGTGGCTCAGTGGGTTAAGGGAGACCGTGGTGCTGTTTGGGATTTAGGGACAGAAAGTCTGAACCGCTGCTGTATATTAATCGTAACTCAGATAATTCAGCCATGGGGAAGTCTCTCTTCTCTTTGCTGAAGCACAAAAGCGAGGGTCGTGAGGATCTGAAGCCGAAGGAGCCTGACTCAGACACAGATGAGGACAAACACGATATTTCCCAGTTCCCGTATGTTGAATTTACAGGCAGGGACAGTGTGACATGTCCTACTTGTCAAGGCACTGGAAGGATACCAAGAGAACAAGAAAATCAACTTGTTGCTTTGATACCATATAGTGACCAAAGACTGAGACCAAGAAGAACAAAGCTGTATGTAAGTGTGTCGGTCCTGGTGTGCCTTCTGCTTTCTGGCCTCGCTGTCTTTTTCCTGTTCCCCCGCACCATTGATGTGACCTATATTGGTGTTAGGTCTTCGTACGTTACTTTTGATACAGAGAACCGGATTGTGTATCTCAACATCACGAACACACTCAACATCACTAACAACAACTACTACCCAATACAAGTGACAAACGTCACAGCACAGGTGCAGTTCTATAAGACTGTCATTGGAAAATCGCTTGTGAGTAATGTGACCAGCATTGTACCTCTGGATATGAGACAGGTCGACTTCTCAGTTCCTACAGTCATAGCCAATGAGATTAACTATATCTTtgacTTCTGTACCATGCAGTCCATAAAAGTACACAACATTGTTGTAATGATGCAGATAACTGTGACCACTGTGTACTTCGGACATGCTGAGCAGATTTCTCAAGAAAAATACCTGTATGTGGACTGTGGTTCAAATACCACCAACCCCAATGGACACACAAACGTGATACAGTGACGCTCCTCACACTGAATCCTGACCTGCAGGACTTCTTATGTGATGCTATCTGAGACTACTGGTTCTGACTGATCTTGGTGCGTGTGCATGGCGATGCTAGAAAGATCTCATGTATTTTCTCATTATTACAGTCATGGCCGAAAGTGTTGGCACACCTGAACATTTTCCAGAAAGTTAAGTATTTCTCCCAGAAAGTTAATGCAGTTGCACATGTTTTGTTATacatgtttatttcatttatgtgtattggaacaacacaaaaaaaagaaaaaaagaatgtcTTTGCTGTCACAAAGACAtagagaacagaaagaaaaaagacaaacattGTGGAAAAATATCTCAAGGTTACAAATCATCTCCAGAGATCTTGGTATTCCCTTTTCTATGGTGCACAACATATTCAAGAAATGTACAACCCATGGCACTGTAGCAATGAGAAGTGGTGAAAGAGAAAAGTGATAAATTTAAGgtgtcctgcaggctcagggtgcatcattGTCTGCGCAAAGTATCTgtcaacattttaattaaatgaaacacTATGACAGGGGACCCAGGAGGACCCCACTGATGacacaaagacataaaaaagcTAGACTGCAGTTTACCAAAATGTATGTAAGTAAGTTCTTGTGGACAGATGAGTCCAAGATAGAGCTTTTAGGTGAAGCACATCATTCTGCTTTTAATCGAAAACAAAATGGGGTTGATTTGAAATCTGAAGAATACCAAATACCATTTTGGATTGCAATATAGGTCATAGTGTCATAGAACGCGGGGTTTGTGTCCTAGGTCATGGGTTTTCCAGCAGACATTGACCCCAGGGTCCCAgagattttaagagtttttaagtAGCCAGCAATGAGTCTGGATCTTCATTCTATCGAACACCTGTGGAGAGATCATAAAATCCTTGTTGGGAGAAAGCACGCTTCACATATTAGAGACCTGGAGCAGTTTGCAAAAGAAGACTGGCCAAAAATTCCAGTTGAGGTGCAAGAAGCTTCTTGATGGTTATAGCAAGTGATtgatttcagttattttgtCCAAAGTCTAAGCAACCAAATATTAAGCTAAGAGTGCCAATAATATTGCCTGTCTCAGTTttgtgtgaaatatatatatttttttttctttcattttttgtgttgttccaatacacacaaaggaaTATGTAATTACAATCATTTTATGGTAGAACAATTTCGGTAGAAAACACTTTCGGCCAtgactaaattattatttttatttacattattgatttattagagCAAGGTTCAGAGGAGGTAGAAGCAGAGTATGAAATGTAACAAATTCCACAGTCATGAGACCTCTTTTCACTGGCTCATTATGTCAAAAAAAAGAGCGCAATTGGACAAGAAGAAGTGTTGATTGTGAAGAAATCATGCACATATAAACTGATTTGCCAGTTATAGACTGcattcacaaaaaaactaaGCTTTTCAGAAACCACtattaactattttttcttGAAGGGCagtggagagagagattaaCACTGTAAGAAGTATTTTAGTCCAAGTCCATGCACAGCTATATGTTTttcctgaaatgtaaaatatcacTGCATtagaaataaagacatttttatatgtgtatttttacatacatatcTTGTACAAAAATACCTTTGTCTTGGcctaaaaagtatataaaacaaatctgtttaaaatatgttttaagtgtgtgtgtggggggggatGTGTTGTAATTTTCAGGTTTGCAATATTTGTAAAAAGGGAATCGACTTACTAACTGCATCTTTTGCATCTGATAATATTGTCCTTTTTTTGGGTCACTTTTGTAGTCAAGCTTGTTTTATTTACAAAGATGTGTAGAACTACTGGTTTAATTTGTGCTTTACTTTAATCAGTTTagcatattttaattaaatgttatttttaatcacTTCATAACAGTTTGagtttctgttttatatttattctatgtATTAACAATCCCTCATCTCTGTAGGGCCCCTTTCCCCCTTTTACAAAGTAGGTAATAAATACATCTGCTGTAAATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4006 lncRNA downstream 14594 11762634 ~ 11762984 (-) True G3067
TU4005 lncRNA downstream 15003 11762369 ~ 11762575 (-) True G3066
TU3999 lncRNA downstream 16769 11755295 ~ 11760809 (-) True G3062
TU4000 lncRNA downstream 17751 11759208 ~ 11759827 (-) False G3062
TU3991 lncRNA downstream 23563 11731515 ~ 11754015 (-) True G3055
TU3989 lncRNA upstream 3917 11791059 ~ 11797484 (-) True G3053
TU4024 lncRNA upstream 54057 11841199 ~ 11842185 (-) True G3083
TU4103 lncRNA upstream 97163 11884305 ~ 11884699 (-) True G3149
TU4104 lncRNA upstream 100826 11887968 ~ 11889246 (-) True G3150
TU4148 lncRNA upstream 119791 11906933 ~ 11909013 (-) True G3163
XM_007232357.3 mRNA downstream 275 11767555 ~ 11777303 (-) True LOC103030898
XM_007232340.3 mRNA downstream 51380 11714121 ~ 11726198 (-) True LOC103024995
XM_007232339.2 mRNA downstream 64307 11709625 ~ 11713271 (-) True arl4a
XM_022683647.1 mRNA downstream 468914 11304590 ~ 11308664 (-) True lrrc72
XM_022671366.1 mRNA upstream 136860 11924002 ~ 11940744 (-) True LOC111192956
XM_007236706.3 mRNA upstream 159328 11946470 ~ 11976692 (-) True LOC103031554
XM_007236705.3 mRNA upstream 230873 12018015 ~ 12214741 (-) True gbe1
XM_007234502.2 mRNA upstream 828512 12615654 ~ 12626454 (-) False LOC103022193
XM_007234501.2 mRNA upstream 828512 12615654 ~ 12626454 (-) True LOC103022193
XR_002651739.1 other downstream 483696 11281209 ~ 11293882 (-) False sarm1
TU3680 other downstream 1093113 10662422 ~ 10684465 (-) False LOC103025442
TU3640 other downstream 1194831 10582289 ~ 10582747 (-) True G2783
XR_002651630.1 other downstream 1417912 10247465 ~ 10359666 (-) False rap1gap2
TU3335 other downstream 2021834 9748932 ~ 9755744 (-) False hspa13
TU4317 other upstream 953002 12740144 ~ 12758513 (-) True G3297
TU4408 other upstream 1343070 13130212 ~ 13135641 (-) True LOC111197384
XR_002648804.1 other upstream 2337640 14124782 ~ 14132536 (-) False LOC111189390
XR_002648814.1 other upstream 2337986 14125128 ~ 14132536 (-) False LOC111189390
XR_002648788.1 other upstream 2340227 14127369 ~ 14132536 (-) False LOC111189390

Expression Profile