RNA id: XM_007234501.2


Basic Information

Item Value
RNA id XM_007234501.2
length 3022
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC103022193
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 12615654 ~ 12626454 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTAAACAAAGCTTGTaaactataaaaacaataaagactGCAACAATACATAGTCTAACACATAATTAATGTTTCATTGAgtttttagcagtttagcttcatTCACCCAAAAAGGGGCCTGAATTTCCATCATTACTGCGCATGCGCGCCGCCTGGGCGACGTCTCCTGTAAAAAGAGTCACATGAGCCGCTGTCGCAACTTCTTTCAGTAGCCTGCTTTTCTCCAGCAGTTCTAAACACCCTCCACATGTTAAAATGGACAGTCTAGGACTTAAACTACATGACTTTTCCCAGTTCAGGTGATATGTCAGCTAAAATTCACCATCATGTCTGTGGATGGCCCCCGGACGTCGGTGTTCACCTTCCAGTCAGCCGTACACAGTGTGCATGTCCTCCGCTCCCTGGATGAACAGAGACAGAAGGACGTCCTCTGTGATGTGACCGTAGAAGTGGAGTGCAGGAGCTTTCGAGCGCACCGCTCCGTACTGGCATGCTGCAgcaactatttttacaccaggcTCCAAAACAACACGGGCTGGAACTTGGTCATCAATCTACCTGATGAAGTCACTGTAGAAGGCTTTGTGCCTTTGCTGCAGTTTGCCTACACTGCAAAACTTCACTTCACCAAAGACAACATTCTGGAGATTCACAGATGTGCCGAGCTGTTGGGATTTCACAATCTTGACAAAGCCTGCTTCGAGTTCCTCATCCCCAAGTTCTCTGATGGCAGCGGAAACACTCAGGAAGCCAAGAGGAAGAGCAAAAACAGCAACAAGAGCAAAGCCTGCCATGAGAAACCCTCAGCTGCCAGTGGAGACTGCAGTACTACCAGTGAGCATCACACTAATACTGAAACAGAAAATGTAGCGCTGGTTCCTGAGGTTGAGACGGTACCTAGTGTGCAGACTGAAACAGACTGTGTGCCTCAGGTTCCTGAGGTTGAGGTGGTATCTACTGTGCAGACTGAAACAGACAGGGTGCTGCAGGTTTCTGGGGTTGATACAGAACCTATTGTGCCAAGTGCACAGTGTCCTGAAGAATGCCAGACTGTTTCCTCTAATGAAGATCTACCCTTAAATGTACCCTCAGTCTCATTCCAGACTGCTTCTGGCCAGGACAGAACAGAACTGTGTTTACAGAACTGCGGGCCTCAGTTACCACTGTCTTCCTCAGTACCGGCCGGAGTGGTCTGTCCGTTTCTTTCAGTAACTTGCACCAGTAACAGTGAAAATGTGCATCCTGCCACAGCGGGCTGTGATGGGGACATTTTGGAGATGGGAGAAGCGTTCCAGAATGGACTGTCAATGGATGTTGCACTTGATGTTCCTGGTGAAACATCTGGCACTGAACCTGTAACCATGCCAGATTTAACTGAAGGTCAATTTAACCAGCCCATAAGGGTTCTGGAACCATCAGCAGAATGCAGCCAGTTGCGTCCTCTAAGCCCCACAGAGACCAGTGAAGTTTTGGACAGCATTGCGTCAGTGACTAACCTAGAGAGCATTAACTCCGAGGCCCCGCAGACCTTTGACTCGGATGAGCAAATATTCCCTGATCCAGCACCTAGTGGCGGGTCCACAGAAAGGAGCACAGTAGAGAGGGAGGTGGCAGAGCATCTGGCGAAAGGTTTTTGGCCAGATTTAAGCTCTTCTTTGGCAGAGCCTCTGGAGTCGATGGAGCAGGCAGCTGTAGGGAATGGTGCCGACTTCCACTGGCTCAAGCACCTGGACTTAGGTGCCGCCCCTGATGACTGCCCTTTCCTCAGAGACCTAAGCTCCAAAGATGGACAACCCTCAGGAGGTGACAGTCTGTCCAAAGAAGAGAGCAGAGAAAGTTCCTGTGTGTCTCCTATAATCTCTGGCGAGAATTCTGAATGCGACACAGATGGAGACTGTGCGGATCTTGGTGAGCAAGTGTGTGAGGTAGAACTGCCATTCCCTGTTGAGCAGATTCCAGGCATGAGCAGGCGTGCTTTCCTGCAGATGCTGAAGGAGCAGCGGCTGACCGCAGAGCAGCTGGAGTTTGTGCAAGACGTTAGACGTCGCAGCAAAAACCGTATGGCTGCTCAGCGATGCCGCAAAAGAAAACTAGACTGCATCTACAGGCTGGAGGGGGACATCAAGAAACTGAGGACACAGAAGGAGAAGTTGCTGCAGGAGCGTagccaactgaagcagaacatggAGGAAGTGCGGCAGTCTGTCTCGGGACTGTGCCAGATTGCGTGCCCCGAGGCGTTAGCACAGCCGGAGCAGCTCACCATCTTAGCCAGGTACCTCTCCTCAGATTGCCCCACCTCACTGCCCCTCACCCCCATGGCTTGTCCTGGCTTGGCTGCGTCTGACCAGGACAACCTTCCAGACACCTGCCTTGAAGCTAGTGTCACTGGACAATCTCCAAATGACTGTCCCCTAGGAAACAGAGCAGGAATTAAACCTACTTCTACACTCTTTCAAGATGATACACAGAGCGACGTTACAGAACCTCACGTCCCGTAATCCAGAAGGCAGGTCCGTGTGGAAACGGCAGAGGAACATACTGTATCTGTGAGCGTGGTTATGGTAGAGCACAAGTCTGCCATTTGTATATAATAGTACAATTATATGTGTAAGTGGAAaataattttcacattttatattatacttggatttAATCTCAATGAACTGATTATTACTGCAAGCATTTGCTACCTAACAATCGGGGGTGTCGtttgaaaatatatactgtacacttaTTTTCAAAGAAATGATTCCAAAAAATTGCTGCATAGTATAAACTATTGAAACAAACTTGCCAAGCCGTTGCCAAGTGATTGTGAAGAGTCGCAGACACTTTGCAGATGTTTGTCATGCtaaatatctgacccagtcggcGACTGTGTGTCAAGAGCATTAACTacttacagccaatgggatcacaaagaaagagagaactaTAGGTCCAAAACGCATGCTGTTTATATGCTGTTTCCCCCCATATATCAGTTTTAAACTCTAGAGGAGGCCTGCAAGTGAGTtcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4277 lncRNA downstream 37243 12576767 ~ 12578411 (-) True G3268
TU4272 lncRNA downstream 46084 12568302 ~ 12569570 (-) True G3263
TU4122 lncRNA downstream 678424 11933003 ~ 11937230 (-) False LOC111192956
TU4140 lncRNA downstream 682041 11928854 ~ 11933613 (-) False LOC111192956
TU4117 lncRNA downstream 683202 11928854 ~ 11932452 (-) False LOC111192956
TU4322 lncRNA upstream 89649 12716103 ~ 12720619 (-) True G3301
TU4315 lncRNA upstream 132808 12759262 ~ 12762601 (-) False sgcg
TU4316 lncRNA upstream 132808 12759262 ~ 12762601 (-) False sgcg
TU4353 lncRNA upstream 372682 12999136 ~ 12999640 (-) True G3324
TU4371 lncRNA upstream 408035 13034489 ~ 13035079 (-) True G3337
XM_007236705.3 mRNA downstream 400913 12018015 ~ 12214741 (-) True gbe1
XM_007236706.3 mRNA downstream 638962 11946470 ~ 11976692 (-) True LOC103031554
XM_022671366.1 mRNA downstream 674910 11924002 ~ 11940744 (-) True LOC111192956
XM_007232341.3 mRNA downstream 828512 11777578 ~ 11787142 (-) True tmem106b
XM_007232357.3 mRNA downstream 838351 11767555 ~ 11777303 (-) True LOC103030898
XM_015601632.2 mRNA upstream 41581 12668035 ~ 12706109 (-) False LOC103022701
XM_015601631.2 mRNA upstream 41581 12668035 ~ 12706108 (-) False LOC103022701
XM_007234503.3 mRNA upstream 41581 12668035 ~ 12706107 (-) True LOC103022701
XM_007234507.3 mRNA upstream 132612 12759066 ~ 12781165 (-) True sgcg
XM_007260899.3 mRNA upstream 526565 13153019 ~ 13165105 (-) True ap2s1
XR_002651739.1 other downstream 1321772 11281209 ~ 11293882 (-) False sarm1
TU3680 other downstream 1931189 10662422 ~ 10684465 (-) False LOC103025442
TU3640 other downstream 2032907 10582289 ~ 10582747 (-) True G2783
XR_002651630.1 other downstream 2255988 10247465 ~ 10359666 (-) False rap1gap2
TU3335 other downstream 2859910 9748932 ~ 9755744 (-) False hspa13
TU4317 other upstream 113690 12740144 ~ 12758513 (-) True G3297
TU4408 other upstream 503758 13130212 ~ 13135641 (-) True LOC111197384
XR_002648804.1 other upstream 1498328 14124782 ~ 14132536 (-) False LOC111189390
XR_002648814.1 other upstream 1498674 14125128 ~ 14132536 (-) False LOC111189390
XR_002648788.1 other upstream 1500915 14127369 ~ 14132536 (-) False LOC111189390

Expression Profile