RNA id: XM_007236705.3


Basic Information

Item Value
RNA id XM_007236705.3
length 3563
RNA type mRNA
GC content 0.47
exon number 16
gene id gbe1
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 12018015 ~ 12214741 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGCAGCAGGTACTTCAGCTAGGCGTTCATGTCCAAAACTGCCCTTTGCCATTCGAGCTGAGGGAGAACCGACTGACCCGTGATGATCTTTAACCACCTCCCGCTTTAAAGAGCCGCTGCCAACTTTAGCGGATCTGATTTAGAGCAGCGTTCAAGCGCGCCCGCCTGTCTGCTGCTGCTCACTCCGCGAACTGCGCTCGATTACTCCGGTCTGGAGCGAACATGGCAGAAGCTGAGGATAATGTTTCCATTCCTGAGCTCAGCTCGCTTCTACAACTGGATCCTTACCTCCAGCCTTTTGAAAAGGACTTTCAGAGGAGATATGGCTTGTTCCAGAAGCAGCTCTCACTCCTGGAGGAGGCCGAGGGAGGCTTTGATCAGTTCACACGCAGCTACTGGAGCTTTGGTGCTCACCGCCAGCCAGACAACAGCCTCGTCTTTAAAGAGTGGGCCCCAGCTGCTGAGGCGCTGTTCCTCACTGGAGAATTCAATGGCTGGGATAAATTCGCTCATCCATACCAAAAGAAAGAATTTGGGAAATGGGAGCTGCACATCCCACCAAAAGAAGACAACACACCAGCTGTTCCTCACAATTCCAAACTGAAGGTGGTGGTTCACACCAAAGAAGGTGAGCGGTTATACCGGATTTCACCTTGGGCAACGTATGTGAACAAGGTCAGCACGGCTGTTGTGTATGATTGGGTGCTCTGGGACCCTCCTCAGCCGTATGTGCACAAGCATCCTCGCCCACGGAAGCCCCGCAGCCTACGGATCTACGAGTCTCACGTTGGCATCGCATCACCAGAGGGCAAAGTGGCATCTTACAGCAACTTCACACACAATGTACTGCCTCGAATAAAAGACCTCGGCTACAACTGTATTCAGCTGATGGCTATTATGGAGCATGCCTATTACGCAAGCTTTGGCTACCAAGTTACAAGTTTCTTCGCAGCATCCAGTCGTTTCGGCACTCCAGATGAGCTGAAGGAGCTGATTGACGTGGCTCACTCTATGGGGATCGTAGTGCTGTTAGACGTGGTTCACAGCCACGCATCTAAAAATACTGAGGACGGCCTGAACAAGTTTGATGGCTCTGACTCCTGCTTCTTCCACAGCGGCCCACGAGGAGAGCACGCGCTCTGGGACAGCCGACTCTTCAACTACTCCAGCTGGGAAGTGCTGCGTTTTCTGTTGTCAAACCTGCGTTGGTGGATGGAGGAGTACCGGTTCGACGGCTTCAGGTTCGATGGGGTTACGTCTATGCTCTACCATCATCACGGAATGGgTGCAGGATTTTCAGGTGACTActcagagtattttggtcttCAGGTTGATGAGGACTCTCTGGTCTACCTCATGCTAGCCAACCATATTCTTCACTCTCTGTATGAGGACTGCATTACTATAGCAGAGgatGTGTCTGGTATGCCCACGCTGTGTCGACCCATAAAGGAGGGAGGCTGCGGCTTCGACTACAGACTGGCCATGGCTATTCCTGACAAGTGGATCCAGATCCTGAAGGAGTTTAAGGATGAGGACTGGAACATGGGGGATATTGTGCACACTCTGACGAACAGGCGCTATGGGGAGAGCTGTATTGCGTATGCAGAGAGCCACGACCAGGCTCTGGTGGGAGACAAGACCCTGGCCTTCTGGCTGATGGATAAGGAGATGTACACCAGCATGAGCACCCTAATGCCCATGAACCCCATCATTGATCGGGGCATCCAGCTGCACAAGATGATCCGGCTGCTCACGCACGGCCTGGGAGGGGAGGGCTACCTCAACTTCATGGGTAACGAATTTGGCCACCCCGAGTGGCTAGACTTCCCCCGCGTGGGGAATAACGAGAGCTACCACTACGCCCGCCGGCAGTTCAACCTGTTGGACACAGATCACCTGCGCTACCGCCAGCTCTACCTCTTCGACCGGGACATGAACCGCACCGAGGACAAATATGGCTGGCTGGCTGCACCCCCGGCCTATGTCACTGCGAAACATGAGGGTGACAAAGTGATCATTTTTGAGAGAGGAAACGTCATTTTCATCTTCAACTTCCATCCCGTGAACAGCTACAGCAGCTACAGAGTGGCAGTGGAGGCAGCAGGAAAATATAAAATCAAGTTAGACTCTGATGAAGTCCAGTACGGAGGCCACGGCAGACTGGACCACAACACAGAGTTCTTCACCGAGTCCATCCCATTTAACGGACGGGCCAACTCCatgcagGTTTACATTCCCTGCAGAACAGCTGTTGTTCTGGCCAACGAGGAAATCGATTACTGCTACTGAAACACCATCATTGATTCACTGAGAGATTGATACTCAGCGCacatctgcctctctctctctccgctggCCTCTCCCGAAGACATGTCTGCCAGACACCTCCACACTCTCCCTCCATTCCTCCGCCTCACCCAAAGATGAGCTGTTCGAGATTTCCTAATGTTATCTGGGTTTATTTTGAACATGGGAGGACATTGCGGTGTGCTGTGTCCAGTGTAATGGATAGCATTCCTAACTTCCCTTCCCTGGGTGTTCACAGATAGTTGTAATGAATCCAGTAGTTTGTTATAAATCTTATTCCATGCCAAATCCCAAGTGTTTCTTCACCTAATAAAGACCACCAGGTCTGTGCAGATTACATTACTCAGTGATAACTGTTTAAAATGAGAAGCCACACCTAAATATGTCATGATAGAAACCTATTGCTGTTCAATTGCCATggtatatattttaagtgaccaggataataatgtttattgatATTTGTTGTAATAATTTACACTGGAAATTTACAGGAAAAATGGGAAATTTGATTTGTGTTCTATTTAATTTGTGAAACACAAGCACTTTCTTGTGACGTTGAAATTCTTTCTCGAAATCttgtttataatattttgtatgtatttgcTGACTGTTTTCAATTCAAGTCAATTCAatgcaattgtttttttttttaacaaatcatAAGCACATTTAACGAAGGGagggatgatgatggtgataataTGAGAGGGTGATGATATTTGCCTCTTAGTGAACAGAATTAAGCTAGGAATGTTTGTGTGATATTTTCAGGTAAATAGTAtcatacctttaaaaaaaaaaaacaagtccaCTGTGTGATGACTAATTAGCTTAGTtactaaatactgtatattctcaCTGTATACGAATATGAATTTACTAAAAATGTGTGACGTTGTGACGCTAGAGGACATTGAAGCTGTTTAGTTCACCAGCATGTCAATCTGTGTGTTCAGTAAGTGTGAAAAATCATCTCCGACCACATGCACTGTGATGACTGTGTTCCACTTTATTTTGTAGTGTAACCTATGGAGACTTGTTAACACCTTAACAGACTTGTTAACACACTCTATAATCGTGAAAGTCTTCATGGGTATAGATTAGGGATAGGACGAGAACAGGCATGATCTTACACGGCGAGAGGACATTTTAGCATATTAATGAATGCACCTTTAATATAGGCAATTCAgggtattatgtattataaaccCTTTTCACACATGCACAGTAACACAGAGGAGCTGTGTTTG

Function

GO: NA

KEGG:

id description
K00700 GBE1, glgB; 1,4-alpha-glucan branching enzyme

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4122 lncRNA downstream 80785 11933003 ~ 11937230 (-) False LOC111192956
TU4140 lncRNA downstream 84402 11928854 ~ 11933613 (-) False LOC111192956
TU4117 lncRNA downstream 85563 11928854 ~ 11932452 (-) False LOC111192956
TU4146 lncRNA downstream 99670 11917874 ~ 11918345 (-) True G3161
TU4148 lncRNA downstream 109002 11906933 ~ 11909013 (-) True G3163
TU4272 lncRNA upstream 353561 12568302 ~ 12569570 (-) True G3263
TU4277 lncRNA upstream 362026 12576767 ~ 12578411 (-) True G3268
TU4322 lncRNA upstream 501362 12716103 ~ 12720619 (-) True G3301
TU4315 lncRNA upstream 544521 12759262 ~ 12762601 (-) False sgcg
TU4316 lncRNA upstream 544521 12759262 ~ 12762601 (-) False sgcg
XM_007236706.3 mRNA downstream 41323 11946470 ~ 11976692 (-) True LOC103031554
XM_022671366.1 mRNA downstream 77271 11924002 ~ 11940744 (-) True LOC111192956
XM_007232341.3 mRNA downstream 230873 11777578 ~ 11787142 (-) True tmem106b
XM_007232357.3 mRNA downstream 240712 11767555 ~ 11777303 (-) True LOC103030898
XM_007232340.3 mRNA downstream 291817 11714121 ~ 11726198 (-) True LOC103024995
XM_007234502.2 mRNA upstream 400913 12615654 ~ 12626454 (-) False LOC103022193
XM_007234501.2 mRNA upstream 400913 12615654 ~ 12626454 (-) True LOC103022193
XM_015601632.2 mRNA upstream 453294 12668035 ~ 12706109 (-) False LOC103022701
XM_015601631.2 mRNA upstream 453294 12668035 ~ 12706108 (-) False LOC103022701
XM_007234503.3 mRNA upstream 453294 12668035 ~ 12706107 (-) True LOC103022701
XR_002651739.1 other downstream 724133 11281209 ~ 11293882 (-) False sarm1
TU3680 other downstream 1333550 10662422 ~ 10684465 (-) False LOC103025442
TU3640 other downstream 1435268 10582289 ~ 10582747 (-) True G2783
XR_002651630.1 other downstream 1658349 10247465 ~ 10359666 (-) False rap1gap2
TU3335 other downstream 2262271 9748932 ~ 9755744 (-) False hspa13
TU4317 other upstream 525403 12740144 ~ 12758513 (-) True G3297
TU4408 other upstream 915471 13130212 ~ 13135641 (-) True LOC111197384
XR_002648804.1 other upstream 1910041 14124782 ~ 14132536 (-) False LOC111189390
XR_002648814.1 other upstream 1910387 14125128 ~ 14132536 (-) False LOC111189390
XR_002648788.1 other upstream 1912628 14127369 ~ 14132536 (-) False LOC111189390

Expression Profile