RNA id: XM_007245106.2


Basic Information

Item Value
RNA id XM_007245106.2
length 2262
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC103045337
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 1783204 ~ 1792128 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acgtaagtatgtaaagacgtgtgacgtggccagaagaagagaagaagcgacccaacaccccagtttttagaatgagtATATTATGCTTAGCAGGGATGTTGGTTCCAGCACACTGCtaccattaaacacagtttagagacaaaataatacggactgccacttaaaatgaataatagttATTGATTAAAGGGTCCCAGTATCTGTAGGTGCTTTCCTTGTGTTGTGTATCTGTGAGAAGTTCAGCAGAGGtggagatggtggaggtgggctggtctgttgGTTATTTCACACATTCCACTCTCCATTGTTTACATCAGGAAGGCCGTGCTGCTGTCAGGGCTACACTGGCACTGgagaggaaacacacacacacacacactgctaagCAATGGGATGGAAAAAGTGAGTATCTCAGAGCGAAGTGCTCTCTCTCATCCACAGCCCTTATCTTCTCTCAGACTGAAAGACCTGAGCAGATCTCAGTTCAGCTTCATTAGTGTAGATCTTCTGGATCTGATGCTGATCATCTCCCGTATTTGTTCTCGCTGTTCTCGCTCAGCCGTGCTATCTCTCCTGTGTTCGTAGTGTGGACTCCTGATCCCAGCTCACCTGGTCACCAGGGCAACCCTTAGATAAACCACAGGAGCCTTGATACCTTGGCAATGGAGCTGCGCCAGGAGACGGAAGCTCTGAGGTCCCATAAGGTCGCCTCCCACAGGAGAGCAATAAAAACACGAATCGTCTTTACACCTCTTTACACCGTCCTTATCGTCCTCTACCTGCTGTCTTCTTCAGAGGGACGAACACAGGGATGCGAGTGTCCCACAGCCACCGTTCTGGACCAGTTTCCCTCCAGTCTTCCCAGCAACACTTGCTGTCTGAACTTCACTGGATCTTCTTTATTTAACGTGTCTTGGACTGCTTTAGCTTCTTTGGAAAGCCTTGAGATTTTGGATCTTTCCTTGTGTAATCTGACTCATATTGATGATGAAACTGCAGCGGGTCTTGCTTTTCCTTCATTGCGAGAGCTGTACTTGAGTCAGAACCAGCTTAAATCAGTGCCTAGAACCTTTCTAGCTGATGCTGAGAGTTTGGAAGTGCTGGATTTGGGAAGGAATCTCCTGCAGGACCTTCCAGTAGACTTCCTGCTCAACTCGAGCTCAAGTCTTCGCGTCTTGCTTCTGGGTGGAAACAGACTTCAGTTTATTCCAAGTTCTGTCTTTAAGGATTCGCTCCAGCGGCTGGATTTGGCGGGAAACCTTTGGAACTGCACCTGTGCTTTGGTGGAGGAGCTCCAGCAGGTCCAGTTTGGCAACTCCACCATTGTAGAGGACACTGTGCGTAATCTGACCTGTGCTTCACCATTGAAACTGGCAGGAAGGGCAGTTTGGTCAATTCAGGCTAAAAACGTTTGTCCGCTAGAACCCACCAGTCTCAGTGCCCTGTTTATACTCCTCCCACTTTTTCTCCTCGTCATCCTGTTGCTCTGCTGGTGCTGCGGCAAAaaggagaacaaaaaaaaagactcctCAACCATCAGGTCCTGCAAGAAGGACACCCACCTGAGCAGAAATGGGCGCTGGGCTCAGGACAAGCTGCCGTTCGGAGAGAAAGCTGCAGCCGATAGTGCTAAAGACGCTATGCTAAAGAACCAGCTGATGCTCCGCCCGTCCTCAGCTCTGCTGGGCAGCACCAGGGACATCTACGAAGAAGTGGAGGTCAAACTCGGGTCCGTGGACTCTCTGGGGCCTCCACCCTCGACCTCGTCCGCAGATGGAGCGGTGGGAAAAGAGGAGCACaaggaaaaggaggaagaagacAGTAAGCAGGACCTGGAGACGGTCAGCGTGACCGAAGTGATGAAAGACTCAGCAGACCGAGAGAAGGCCTACATGACCCAGTCCACCAAATACTACAGCCTGGTTCCAGGACTGGAGATCGAGGATTCGGATCACGGAGAGTACGAGAGCGTGGACCTGTCCTGATGCTACGCTCTGTGTTTACATTACAAAACGTCTTATTACTAAGTTTTAATCTTTATGCCTttattgacatttaaaaaacttgTAAATTGTTTCACACTGGTTGATGAGCACAAAGAGAATTCCAGGTCAGGAAAGTCACTGACTGCTTGAAAAAACACTCCTGAAGAACCTAAAGAACTTTATCTTTCAGTGTATTTGaatgtaataatgttttaacccttgtgtggtgttcatatttttgttacttgtttactttgttactttgtatttaattcag

Function

GO: NA

KEGG:

id description
ko04740 Olfactory transduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU772 lncRNA downstream 19581 1757980 ~ 1763623 (-) True G589
TU774 lncRNA downstream 19581 1757980 ~ 1763623 (-) False G589
TU624 lncRNA downstream 26890 1754379 ~ 1756314 (-) True G504
TU621 lncRNA downstream 29350 1751182 ~ 1753854 (-) True G502
TU613 lncRNA downstream 45287 1736394 ~ 1737917 (-) True G496
TU801 lncRNA upstream 91710 1877509 ~ 1894453 (-) False G608
TU800 lncRNA upstream 91989 1877788 ~ 1878218 (-) True G608
TU809 lncRNA upstream 134820 1920619 ~ 1921201 (-) False gtf2b
TU811 lncRNA upstream 230757 2016556 ~ 2035389 (-) True G616
TU841 lncRNA upstream 280776 2066575 ~ 2067409 (-) True G644
XM_022669681.1 mRNA downstream 10313 1764264 ~ 1772891 (-) True best4
XM_022669642.1 mRNA downstream 10669 1764264 ~ 1772535 (-) False best4
XM_007245109.3 mRNA downstream 53818 1719812 ~ 1729386 (-) True acadm
XM_022669424.1 mRNA downstream 65550 1707739 ~ 1717654 (-) True rabggtb
XM_022669078.1 mRNA downstream 286777 1493166 ~ 1496427 (-) True LOC111192362
XM_022669916.1 mRNA upstream 10762 1796561 ~ 1833032 (-) False LOC103044599
XM_022669880.1 mRNA upstream 10762 1796561 ~ 1833032 (-) False LOC103044599
XM_022669852.1 mRNA upstream 10762 1796561 ~ 1833032 (-) True LOC103044599
XM_022670058.1 mRNA upstream 49942 1835741 ~ 1858224 (-) False ndc1
XM_022670112.1 mRNA upstream 49942 1835741 ~ 1858223 (-) False ndc1
XR_002648446.1 other downstream 927044 855579 ~ 856160 (-) True LOC111197534
TU266 other downstream 1112489 652484 ~ 670715 (-) False LOC103037308
TU795 other upstream 78716 1864515 ~ 1873127 (-) True yipf1
XR_454399.3 other upstream 637914 2423713 ~ 2434401 (-) True znf414
TU1089 other upstream 764417 2550216 ~ 2554687 (-) False G807
TU1203 other upstream 1124955 2910754 ~ 2968477 (-) True LOC103032016
TU1713 other upstream 2115084 3900883 ~ 3909663 (-) False wdfy1

Expression Profile