RNA id: XM_007245151.2


Basic Information

Item Value
RNA id XM_007245151.2
length 2165
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC103033290
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 3376610 ~ 3383122 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATCAGTGGTCAGTTGTATAGAAGTTCTGTGTAATAACCTAAAATAACCCCAATAACTCCGTTCCATTTATACTTCCACTGTTCCACATGATCGAACCTCGTATCTCCGCTGTTTCCTGCTTCCTTCCCAGATGCTGCAGTAATAAGGATGTGTTTAGGAGGAAGAGctggtgtgtatatatactccTGCTCATCCcacagatacacagatacacactcaTATCATCCTACCTAACGTACACTGGACTACAGCatatagcacacacacacagccgctCTGAGGAAAGatGCAATCTGCTTTTGTTGTACTGCTTTTGTTGGGAGGGTCCTCTCTCTCCACAGTGTTAGCTTTCCCAAATGGTCTTGTAACTCCTGCTTGTGAAAGAATGATACCAAATCATGGTGTTGATTCAATGTCGACCCCTGCACCTTTCTCCGTCATCTCAAACAGCTCCAGTTACGTGGCCGGCCAGCAGATTACAGTGACCCTTCAGGCCAATGAAACCGGGTTTTTTAAGGGTTTTCTGCTTCAGGCTCGGGCAGCAGATACAGGAGTCGGCCCAATCGGGACGTTCAGTGTGACGGGGACTGAAGCTCAGCTGCTCAACTGCAGCACTGTCGCCTCAGCTGTCAGTCACACATCAAATGTCAACAAGACAACTATCCAGGCCACGTGGACGGCCCCGGACAATGAGTTTAGGGATATCGAGTTTAGAGCTACATTCGTACAGAACTTTTCCATATTCTGGGTCGGGGTAAGAAGCTCTCGGCTTGCGTTTGCTGGTGTAATCCCAAACACGACCGTGGTCGCTCCAGCAAACTCAACTCTGGTTCCAAACACAACCATCGTTGTCCCATCAAGCTCAACGGCCATGGCTTCAAACGTGACTGTGAATTTAAACGGAACCGTGACTCCAAACAGCAGCCCTCCACTCTCCTTCAGCTCCTCGatcctcctcctgctcccaGTGATGCTCCTGAccctctctaacacacactgagacactttTATCATCAGGTTCATTCTTAGGATTGAATAAGCACTGCTTTATATATATGCATCAGTACATACACTTTGATAGTAAACCATTTagaattgtttatatttatgtgtgaTTCTATCCTAAAACTTTATCagatcttcacaaaaaaaatcctaaatgtACATTACAGGGCAGTCTTTACAAACAAGgcttaagcctagtcttggactacacagcatttgaATAGATAGGAGTAATCATTATCCCTGTCCAGGAAACCAATCCAAAGAGACCCAAATCGAGCAAATGATATCcgatatatattttctgtatatatGTGAGTGATAAAAGTATGTAAACTTTGTTTTTAGTATCTAGTGTTTCCCCTgtgcagtaaaataacatttctacTGGAATAAGGGCCAATTCCAAAGCATTAACTTTCCAAATTCTTTGGTTGAACTATTTCtttgcttagggtcattgtcttgttgcatgacccacATCCTGCCGAGACTCAGCTCACAGACAGATGTTCTAACATTTTAATTCAGAATTTTTTGGTGTAGTTCAGAAGCCACCCTGGACCAGATGCATTGAAATaagcccaaaccatgatgctaccaccactgtgtttcacagttgggataggTGTGATTTTCTGCTGAAATACAGTGctttcctttctccaaacataGAAATCTTctcatttaaaccaaaaaatgtTTGGTTTCATCCATCCAATTATATTGCTCTAATAGCCTACTGGCTTGTCCCTGTGACCTTCATTAAACTGCAGACATGCAGCAGTGTTCTTATTTGAGTGTTCCTATCAGGAATATTAACAATAGCCAATGGGagaaaggccttcagttgcttagaagtacCACCAAATTATTTGTGACTTTATTGACTATTACACGGCTTGTGCTCTAACTCATCCAGAACCACATCAGAATTATGTGTTTGCTACAcgattccatatgtgtcccttcatAGGTTTGAtgacaacaatattcattttaaacattaatgatggaaaaaaaaaaaattattgtactTTAGCCGAAGTGAACAATTCACAGCTCTAAATACATTGTACCTTTTTTGTACAGTCTACCTAagtgttaaaaatgtataaaatgccTGAATGAGATGCTCTTTTGTATTTTagtcatattt

Function

GO:

id name namespace
GO:0017040 N-acylsphingosine amidohydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1612 lncRNA downstream 2995 3368803 ~ 3373615 (-) True G1211
TU1371 lncRNA downstream 78964 3296240 ~ 3297646 (-) True G1013
TU1375 lncRNA downstream 81828 3294576 ~ 3294782 (-) True G1017
TU1374 lncRNA downstream 86692 3289505 ~ 3289918 (-) True G1016
TU1343 lncRNA downstream 188628 3187503 ~ 3187982 (-) True G990
TU1616 lncRNA upstream 2251 3385373 ~ 3386231 (-) True G1214
TU1621 lncRNA upstream 30563 3413685 ~ 3415112 (-) False LOC103029371
TU1628 lncRNA upstream 91067 3474189 ~ 3474864 (-) True G1224
TU1670 lncRNA upstream 195107 3578229 ~ 3585540 (-) True G1238
TU1654 lncRNA upstream 212621 3595743 ~ 3599731 (-) True G1234
XM_015604753.2 mRNA downstream 60589 3297813 ~ 3316021 (-) False olfml2b
XM_007245055.3 mRNA downstream 60589 3297813 ~ 3316021 (-) True olfml2b
XM_022673821.1 mRNA downstream 159589 3189007 ~ 3217021 (-) True LOC103033918
XM_022673759.1 mRNA downstream 197016 3163711 ~ 3179594 (-) False LOC111193343
XM_022673733.1 mRNA downstream 197016 3163711 ~ 3179594 (-) True LOC111193343
XM_022671241.1 mRNA upstream 11082 3394204 ~ 3445386 (-) True LOC103029371
XM_022674427.1 mRNA upstream 107750 3490872 ~ 3503293 (-) True LOC103028436
XM_022674557.1 mRNA upstream 133502 3516624 ~ 3554189 (-) False LOC103032346
XM_022674501.1 mRNA upstream 133502 3516624 ~ 3554178 (-) True LOC103032346
XM_022674646.1 mRNA upstream 221064 3604186 ~ 3666404 (-) True LOC103032017
TU1203 other downstream 408133 2910754 ~ 2968477 (-) True LOC103032016
TU1089 other downstream 821923 2550216 ~ 2554687 (-) False G807
XR_454399.3 other downstream 942209 2423713 ~ 2434401 (-) True znf414
TU795 other downstream 1503483 1864515 ~ 1873127 (-) True yipf1
XR_002648446.1 other downstream 2520450 855579 ~ 856160 (-) True LOC111197534
TU1713 other upstream 517761 3900883 ~ 3909663 (-) False wdfy1
TU1773 other upstream 716643 4099765 ~ 4101566 (-) True G1308
TU1837 other upstream 894221 4277343 ~ 4304762 (-) False LOC111193783
TU2412 other upstream 2328214 5711336 ~ 5712686 (-) False LOC103031123
TU2413 other upstream 2329620 5712742 ~ 5721108 (-) False LOC103031123

Expression Profile