RNA id: XM_007260880.3


Basic Information

Item Value
RNA id XM_007260880.3
length 2388
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC103043894
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 13703983 ~ 13713375 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caaggtgAGTGACATCAGAGTCCACTGATCTGGAGGCCTCACTGGCCCTCCATCTCCAGTGCTCTCAGTAACTCTCTCTGACAGACATGAAGCTGGAGCTGCAACtgctgctagcactgctagcCACCACCTGGACTGCAAAGGAGTCTTGTATGGAACGATGTGAAAATGGCTTTGATGCGACAAAATCATGCCAGTGTGACTCGATGTGCACATACTACCGGAGCTGCTGCAGTGATTATGAGTCTCTGTGCCACATTTTGGCCCGTGGAGACACTTTCCCATCTTTTCCTGAAGATGAAGAGAACAGCACAATGGTGCCACCTACACTGGAGAGAACTGTACCACCCCCACCACTGAGAACTCTGCCACAATCCCCATTAAGAACTCTACATTATTCACCACAAGGAACTGTGCCACCCCCACCATTTACAACTGTACCACCACCACTAAGAACTAAACAACCCCCACCGCTGAGAACACTCCAATATACACCAATAAGAACTGTACCAACACCAACGCTAAAAACTGAACTACCCCCACCGATGAGAACTGAACTACCCCCACCAATGAGAACTGAACTACCCCCACCGATGAGAACTGAACTACCCCCACCGATGAGAACTGAACTACCCCCACCAATGAGAACTGAACTACCCCCACCGATGAGAACTGAACTACCCCCACCGATGAGAACTGTACCAGCTCCCCCGCAGAGGACTGTGGTACCTTCACCACCGGTTGATGAGAACACTATGACACCGCCAGCTCCAGACCCTGATGCTGAGATATGCAGTGGAAGGCCATTCGATTCATTCATGCAGCTCAAAAATGGCTCTGTCTATGCCTTTAGGGGGAAGTATTTCTTTGAACTGGATGAGAAGTCAGTATTGCCTGGTTACCCGAAGCTTATTGAAGACATCTGGGGAATAAAAGGTCCTATTAATGCAGCATTCACTCGCATAAACTGCCAAGGGAAGACCTACATCTTCAAGGGTAGCCAGTACTGGAGGTTCGACAATGGAGTCCTGGATGAAGATTTCCCGAGGGACATCTCTGTGGGTTTTGAAAAAATACCAGATCATTTGGATGCCGCCTTTGCCATCCCTGCTCACAGCCACCACGGCAAGGAGAAGGTTTACTTTTTCAAAGGTGATCGTTATTACCAGTATGAGTTTAAGCACCAGCCTTCCCATGAAGAGTGCTTTCAGCTGCACAGGAGTTCCCCCTCGGCCCTCTTCAGCCGATACACCGACCTGTATTATGACGGCTGGACAGAGTACTTTAACCAGCTCTTCAGTGGATTACCACACCATCATGGCAGCCACCACTTCATTGATAAGGACTGGATTGGTATCAAAGCCCCAGTGGATGCTGTGCTAGCTGGAAGGTTGTATGTATCGTCTAGACCTTTACAAAGGCCCAGTAGAAGACGTCAGGATGATGATCAGCAGTGGAGCCAACAAAGGGGTCAACAGTGGGATCAGCAGTGGGGTCAACAGTGGGGTCAGCAGTGGGGCTCCAGACGCAGGCAGAACCGATCTCCTTACTGGGACACTATGGCTGAGAGGGGTATCAGCATTGGGCAGGAGTTTGCTCAGAGGTACGGACAGGAGCACTGGAGAGACCAGGACAGACGAAGGAACGATCACAGACGGCAGTATGACTATGATTATGACAACAGATACAACCCTACTGAGGACCTGGCTACTGACATACTGCGCAGGAGCCAGCCTTTACAGAGTGTCTACTTATTTAAAGGAGACCAGTACTACAGAGTAGATTTGAGGACCAAGCGAGTCGACCGCACCTTTCCTCCATACCCAAGACCTATTGGCAAATACTGGTTGGGCTGCCCAGACAAACCAGGAGCAGAGAAGAGATGAGTCTGCCTGTAAAACTACAGAATGATGTTGTGCttgtatttagtataataaaaaaataccaatCACCAATTAATGTCTATATTCAAACTTAAAAGGGATgtttacacagaaaaataaatttacaATTGTTGACCTATCCCAAATAATTGGTGTCCAATTATAGATTTCTTCTATAGTTCTGCTAAAGAAAAAGTGGacctttttggaaggtgtgtgtctcgTTACATTTGGCATAAATCATACTGAAAGTCAAACAtatggtggtagtgtgatggtctgaggctgctttgctgctttaggacctgaacaacttgctgtaattgatggaaccatgaattctgctctctaccagaaaatcctgaagaagaatgtccggccatcagtttgtgaccttaagctcaggcgtacttgggttctgcagcaggacaatgatccagaCATATTGAGCAACTGTGTAATGATCTTCCAACTCcagttcaaaaataaaaatgctaaatatggA

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0030247 polysaccharide binding molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4577 lncRNA downstream 12101 13689761 ~ 13691882 (-) True G3474
TU4557 lncRNA downstream 29411 13674108 ~ 13674572 (-) True G3459
TU4534 lncRNA downstream 131611 13544500 ~ 13572372 (-) False slc43a2
XR_002652513.1 lncRNA downstream 319036 13381254 ~ 13384947 (-) True LOC111197623
TU4402 lncRNA downstream 552979 13147138 ~ 13151004 (-) False G3356
TU4757 lncRNA upstream 410798 14124173 ~ 14133237 (-) False LOC111189390
TU4755 lncRNA upstream 414963 14128338 ~ 14133237 (-) False LOC111189390
TU4758 lncRNA upstream 414963 14128338 ~ 14131354 (-) False LOC111189390
TU4803 lncRNA upstream 534267 14247642 ~ 14247859 (-) True G3610
XR_002649055.1 lncRNA upstream 567657 14281032 ~ 14318897 (-) True LOC111190296
XM_007260885.3 mRNA downstream 45059 13591095 ~ 13658924 (-) False myo1c
XM_007260887.3 mRNA downstream 53848 13591095 ~ 13650135 (-) True myo1c
XM_007260886.3 mRNA downstream 72970 13591095 ~ 13631013 (-) False myo1c
XM_007260884.3 mRNA downstream 86283 13591095 ~ 13617700 (-) False myo1c
XM_007260889.3 mRNA downstream 122516 13574774 ~ 13581467 (-) True LOC103046123
XM_022662993.1 mRNA upstream 21098 13734473 ~ 13750279 (-) False LOC103025751
XM_022663041.1 mRNA upstream 21098 13734473 ~ 13750279 (-) False LOC103025751
XM_022662931.1 mRNA upstream 21098 13734473 ~ 13750279 (-) True LOC103025751
XM_022662980.1 mRNA upstream 21098 13734473 ~ 13750278 (-) False LOC103025751
XM_022663131.1 mRNA upstream 413994 14127369 ~ 14132535 (-) False LOC111189390
TU4408 other downstream 568342 13130212 ~ 13135641 (-) True LOC111197384
TU4317 other downstream 945470 12740144 ~ 12758513 (-) True G3297
XR_002651739.1 other downstream 2410101 11281209 ~ 11293882 (-) False sarm1
TU3680 other downstream 3019518 10662422 ~ 10684465 (-) False LOC103025442
TU3640 other downstream 3121236 10582289 ~ 10582747 (-) True G2783
XR_002648804.1 other upstream 411407 14124782 ~ 14132536 (-) False LOC111189390
XR_002648814.1 other upstream 411753 14125128 ~ 14132536 (-) False LOC111189390
XR_002648788.1 other upstream 413994 14127369 ~ 14132536 (-) False LOC111189390
XR_002648822.1 other upstream 414062 14127437 ~ 14132536 (-) False LOC111189390
TU4805 other upstream 570248 14283623 ~ 14284225 (-) True G3612

Expression Profile